Bug 223094
| Summary: | biology/htslib biology/samtools biology/bcftools: update to 1.6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Product: | Ports & Packages | Reporter: | Motomichi Matsuzaki <mzaki> | ||||||||
| Component: | Individual Port(s) | Assignee: | Luca Pizzamiglio <pizzamig> | ||||||||
| Status: | Closed FIXED | ||||||||||
| Severity: | Affects Some People | CC: | cartwright, mzaki, pizzamig | ||||||||
| Priority: | --- | Flags: | cartwright:
maintainer-feedback+
|
||||||||
| Version: | Latest | ||||||||||
| Hardware: | Any | ||||||||||
| OS: | Any | ||||||||||
| Attachments: |
|
||||||||||
Created attachment 187279 [details]
svn diff for biology/htslib
Created attachment 187280 [details]
svn diff for biology/samtools
Created attachment 187281 [details]
svn diff for biology/bcftools
Patch looks good. I haven't run poudriere on my Freebsd-11 machine, but will try to do that soon. A commit references this bug: Author: pizzamig Date: Wed Oct 25 10:19:52 UTC 2017 New revision: 452840 URL: https://svnweb.freebsd.org/changeset/ports/452840 Log: biology/htslib biology/bcftools biology/samtools: Update to 1.6 PR: 223094 Submitted by: mzaki@niid.go.jp Approved by: cartwright@asu.edu (maintainer) Approved by: olivier (mentor) Differential Revision: https://reviews.freebsd.org/D12768 Changes: head/biology/bcftools/Makefile head/biology/bcftools/distinfo head/biology/bcftools/files/patch-Makefile head/biology/bcftools/files/patch-configure.ac head/biology/bcftools/files/patch-misc_run-roh.pl head/biology/bcftools/files/patch-prob1.c head/biology/bcftools/files/patch-test_test.pl head/biology/bcftools/files/pkg-message.in head/biology/bcftools/pkg-plist head/biology/htslib/Makefile head/biology/htslib/distinfo head/biology/htslib/files/patch-Makefile head/biology/htslib/files/patch-configure.ac head/biology/htslib/files/patch-hfile__libcurl.c head/biology/htslib/pkg-plist head/biology/samtools/Makefile head/biology/samtools/distinfo head/biology/samtools/files/ax_with_curses.m4 head/biology/samtools/files/ax_with_htslib.m4 head/biology/samtools/files/patch-Makefile head/biology/samtools/files/patch-configure.ac head/biology/samtools/files/patch-dict.c head/biology/samtools/files/patch-errmod.c head/biology/samtools/files/patch-test_test.pl head/biology/samtools/files/pkg-message.in Thanks! |
Update the following ports to 1.6 biology/htslib biology/samtools biology/bcftools common changes: * using predefined BSD_INSTALL_* macros in ${WRKSRC}/Makefile rather than providing INSTALL_* macros via MAKE_ENV in Makefile * @PORTVERSION@ substitution is no longer required for htslib&samtools * to adjust shebangs in python scripts (for samtools&bcftools) changes to htslib: * to respect ${PREFIX} in ${WRKSRC}/Makefile changes to bcftools: * @PORTVERSION@ substitution is now required All ports passed make test & poudriere testport in my environment (10.3 amd64).