Bug 228758
| Summary: | biology/tRNAscan-SE: update to 2.0.0 | ||||||||||
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| Product: | Ports & Packages | Reporter: | Motomichi Matsuzaki <mzaki> | ||||||||
| Component: | Individual Port(s) | Assignee: | Jason W. Bacon <jwb> | ||||||||
| Status: | Closed FIXED | ||||||||||
| Severity: | Affects Only Me | CC: | jwb, w.schwarzenfeld | ||||||||
| Priority: | --- | ||||||||||
| Version: | Latest | ||||||||||
| Hardware: | Any | ||||||||||
| OS: | Any | ||||||||||
| Bug Depends on: | 228776 | ||||||||||
| Bug Blocks: | |||||||||||
| Attachments: |
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Created attachment 194016 [details]
svn diff
oops!
* Installing perl modules into ${SITE_PERL}
* Add LICENSE
I'd suggest to update it to the latest 2.0.0, it would be awesome if you'd find time and contribute Created attachment 194046 [details] svn diff (to 2.0.0) (In reply to Kirill Ponomarev from comment #2) Here you are! Changes: * updating to 2.0.0 (without bumping PORTEPOCH) * taking over MAINTAINER * new COMMENT * add RUN_DEPENDS on upcoming biology/infernal (bug #228776) This version uses autotools, so patches/knobs are rewritten from scratch. The original Makefile installs some files to strange places, so the location is modified to fit with FreeBSD hier(7) as follows: * configuration file: $(bindir) to $(sysconfdir) * header files: $(includedir) to not installed since unnecessary * static data files: $(libdir) to $(pkgdatadir) * perl modules: $(libdir) to $(pkgdatadir) Tested by: poudriere testport (amd64/i386 11.1) Deleted files:
files/patch-Makefile
files/patch-sqio.c
Added files:
files/patch-Makefile.am
files/patch-configure.ac
files/patch-tRNAscan-SE.src
pkg-plist
A commit references this bug: Author: krion Date: Wed Jun 6 15:20:58 UTC 2018 New revision: 471852 URL: https://svnweb.freebsd.org/changeset/ports/471852 Log: Update to 2.0.0 and pass maintainership to committer. PR: 228758 Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp> Changes: head/biology/tRNAscan-SE/Makefile head/biology/tRNAscan-SE/distinfo head/biology/tRNAscan-SE/files/patch-Makefile head/biology/tRNAscan-SE/files/patch-Makefile.am head/biology/tRNAscan-SE/files/patch-configure.ac head/biology/tRNAscan-SE/files/patch-sqio.c head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src head/biology/tRNAscan-SE/pkg-descr pkg-plist, which is present in the svn diff, is lacking in the repository. A commit references this bug: Author: wen Date: Fri Sep 28 00:12:49 UTC 2018 New revision: 480837 URL: https://svnweb.freebsd.org/changeset/ports/480837 Log: - Unbreak by adding missing pkg-plist PR: 228758 Submitted by: mzaki@niid.go.jp(maintainer) Changes: head/biology/tRNAscan-SE/Makefile head/biology/tRNAscan-SE/pkg-plist Hold on, I think wen@ just forgot to close this after commit. |
Created attachment 194013 [details] svn diff updating biology/tRNAscan-SE from 1.23 to 1.3.1, requiring PORTEPOCH bump. * new MASTER_SITES, with changing WWW line in pkg-descr * removing files/patch-sqio.c NOTE: the MASTER_SITES contains the recent version 2.0.0. There seem many changes including build system, dependencies, etc. and I have no time for examining these changes.