Bug 229480

Summary: [NEW PORT] biology/stringtie: Transcript assembly and quantification for RNA-seq
Product: Ports & Packages Reporter: Motomichi Matsuzaki <mzaki>
Component: Individual Port(s)Assignee: Yuri Victorovich <yuri>
Status: Closed FIXED    
Severity: Affects Some People CC: yuri
Priority: ---    
Version: Latest   
Hardware: Any   
OS: Any   
Attachments:
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Description Motomichi Matsuzaki 2018-07-03 03:38:56 UTC 
Created attachment 194846 [details]
svn diff

StringTie version 1.3.4d

Citation:
Pertea et al. (2015) StringTie enables improved reconstruction of a
transcriptome from RNA-seq reads.
Nature Biotechnology 33: 290-295 doi:10.1038/nbt.3122

WWW: http://www.ccb.jhu.edu/software/stringtie/

Tested by: poudriere testport (amd64/i386 11.1/10.4)
Comment 1 commit-hook freebsd_committer freebsd_triage 2018-07-11 21:32:53 UTC 
A commit references this bug:

Author: yuri
Date: Wed Jul 11 21:32:41 UTC 2018
New revision: 474480
URL: https://svnweb.freebsd.org/changeset/ports/474480

Log:
  New port: biology/stringtie: Transcript assembly and quantification for RNA-seq

  PR:		229480
  Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>

Changes:
  head/biology/Makefile
  head/biology/stringtie/
  head/biology/stringtie/Makefile
  head/biology/stringtie/distinfo
  head/biology/stringtie/files/
  head/biology/stringtie/files/patch-Makefile
  head/biology/stringtie/files/patch-gclib_GIntHash.hh
  head/biology/stringtie/files/patch-samtools-0.1.18_Makefile
  head/biology/stringtie/files/patch-samtools-0.1.18_bam__aux.c
  head/biology/stringtie/pkg-descr
Comment 2 Yuri Victorovich freebsd_committer freebsd_triage 2018-07-11 21:33:28 UTC 
Committed.
Thank you for your contribution!