Bug 239901
| Summary: | biology/gatk: Fails to build with Gradle 5.6 | ||
|---|---|---|---|
| Product: | Ports & Packages | Reporter: | Tobias Kortkamp <tobik> |
| Component: | Individual Port(s) | Assignee: | Tobias Kortkamp <tobik> |
| Status: | Closed FIXED | ||
| Severity: | Affects Only Me | Flags: | bugzilla:
maintainer-feedback?
(yuri) |
| Priority: | --- | ||
| Version: | Latest | ||
| Hardware: | Any | ||
| OS: | Any | ||
| URL: | https://people.freebsd.org/~pi/logs/gatk-4.1.2.0.43.log | ||
| Bug Depends on: | |||
| Bug Blocks: | 239875 | ||
The upstream bug report: https://github.com/broadinstitute/gatk/issues/6097 I don't think I can do anything beyond creating the upstream bug report. Please feel free to branch the gradle-5 ports off if they wouldn't be able to resolve it quick. (In reply to Yuri Victorovich from comment #2) > I don't think I can do anything beyond creating the upstream bug report. Thanks, but are you sure that the dependency tarball you provide does not need to be regenerated? The error says that it cannot find the de.undercouch.download/2.1.0 artifact anywhere suggesting it is not available in the tarball However it is available in there, so maybe the project cache dir layout has changed slightly between Gradle 5.0 and 5.6. Can you please take a look? > Please feel free to branch the gradle-5 ports off if they wouldn't be able to resolve it quick. I do not think that any of this is very urgent. Branching devel/gradle everytime we run into some build problem is suboptimal and should only happen as a last resort. I'd think that going from Gradle 5.x to 5.y should not be as difficult as going from Gradle 4 to 5 but maybe this is wishful thinking. (In reply to Tobias Kortkamp from comment #3) It might be that the deps archive simply needs to be regenerated for it to work with gradle-5.6. A commit references this bug: Author: tobik Date: Wed Nov 20 09:51:45 UTC 2019 New revision: 517997 URL: https://svnweb.freebsd.org/changeset/ports/517997 Log: Create devel/gradle5 in preparation of devel/gradle update Many consumers fail to build with newer Gradle versions. PR: 239875, 239900, 239901, 239902 Changes: head/biology/gatk/Makefile head/devel/Makefile head/devel/ghidra/Makefile head/devel/gradle5/ head/devel/gradle5/Makefile head/devel/gradle5/pkg-plist head/misc/elki/Makefile |
FAILURE: Build failed with an exception. * Where: Build file '/wrkdirs/usr/ports/biology/gatk/work/gatk-4.1.2.0-43-g1f31a805b/build.gradle' line: 16 * What went wrong: Plugin [id: 'de.undercouch.download', version: '2.1.0'] was not found in any of the following sources: - Gradle Core Plugins (plugin is not in 'org.gradle' namespace) - Plugin Repositories (could not resolve plugin artifact 'de.undercouch.download:de.undercouch.download.gradle.plugin:2.1.0') Searched in the following repositories: Gradle Central Plugin Repository * Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Get more help at https://help.gradle.org BUILD FAILED in 2s *** Error code 1 https://people.freebsd.org/~pi/logs/gatk-4.1.2.0.43.log