Bug 243237

Summary: [MAINTAINER UPDATE] biology/mrbayes: Update to 3.2.7a
Product: Ports & Packages Reporter: Motomichi Matsuzaki <mzaki>
Component: Individual Port(s)Assignee: Joseph Mingrone <jrm>
Status: Closed FIXED    
Severity: Affects Only Me CC: jrm
Priority: --- Keywords: buildisok
Version: Latest   
Hardware: Any   
OS: Any   
Description Flags
svn diff for biology/mrbayes to 3.2.7a none

Description Motomichi Matsuzaki 2020-01-10 08:00:14 UTC
Created attachment 210584 [details]
svn diff for biology/mrbayes to 3.2.7a

Update biology/mrbayes to 3.2.7a

please note that the MAINTAINER mail address is modified.

The port passed poudriere testport in my environment (11.3 amd64/i386).
Comment 1 Bugzilla Automation freebsd_committer 2020-01-10 08:00:14 UTC
Maintainer informed via mail
Comment 2 Automation User 2020-01-10 08:21:11 UTC
Build info is available at https://gitlab.com/swills/freebsd-ports/pipelines/108314478
Comment 3 Joseph Mingrone freebsd_committer 2020-02-29 21:12:43 UTC
It looks like there is a newer release, confusingly labelled 3.2.7.  Does this look good to you?  It conforms to the Porter's Handbook and fixes warnings reported by portfmt/portclippy/portlint.  I tested in poudriere 11/12 i386/amd64 with the default options and am build testing other option combinations now.

Comment 4 commit-hook freebsd_committer 2020-02-29 23:25:39 UTC
A commit references this bug:

Author: jrm
Date: Sat Feb 29 23:24:41 UTC 2020
New revision: 527483
URL: https://svnweb.freebsd.org/changeset/ports/527483

  biology/mrbayes: Update to version 3.2.7

  PR:		243237
  Submitted by:	mzaki@e-mail.ne.jp (maintainer, with modifications)

Comment 5 Joseph Mingrone freebsd_committer 2020-02-29 23:26:19 UTC
I tested a bunch of different option combinations.  I think everything looks good for the build.

I did some basic run-time tests and it looks good, however when it is run on an older CPU [1] after being built on our package builder, it will core dump immediately.  When building directly on the older system, it runs fine.  Upstream documents this, so I added a pkg-message to warn users.

Thanks for submitting and if there are any problems, please just comment here and we can make changes.


CPU: Dual Core AMD Opteron(tm) Processor 870 (1993.42-MHz K8-class CPU)
  Origin="AuthenticAMD"  Id=0x20f10  Family=0xf  Model=0x21  Stepping=0 Features=0x178bfbff<FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CLFLUSH,MMX,FXSR,SSE,SSE2,HTT>
  AMD Features=0xe2500800<SYSCALL,NX,MMX+,FFXSR,LM,3DNow!+,3DNow!>
  AMD Features2=0x3<LAHF,CMP>