Bug 56882

Summary: mark biology/tinker as BROKEN
Product: Ports & Packages Reporter: Mark Linimon <linimon>
Component: Individual Port(s)Assignee: freebsd-ports-bugs (Nobody) <ports-bugs>
Status: Closed FIXED    
Severity: Affects Only Me    
Priority: Normal    
Version: Latest   
Hardware: Any   
OS: Any   
Attachments:
Description Flags
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Description Mark Linimon 2003-09-15 04:30:16 UTC 
	New distfile 9/13.  "Changes from TINKER 4.0 include some new force
	field parameter sets, improvements to rigid body dynamics, a
	Nose-Hoover thermostat, and numerous minor additions and bug fixes."

	However, the compilation fails in sockets.c with an undefined
	ref to <jni.h>.  This is part of: "an interface between TINKER Fortran
	code and FFE Java objects used for socket based communication."

	Some interested party is going to have to take up this one, I'm
	afraid, as I have no idea what is involved.

How-To-Repeat: 	make extract
Comment 1 Mathieu Arnold freebsd_committer freebsd_triage 2003-09-15 09:16:14 UTC 
Class Changed
From-To: change-request->update
Comment 2 Mark Linimon freebsd_committer freebsd_triage 2003-10-16 00:56:47 UTC 
State Changed
From-To: open->closed

Committed.
Comment 3 Mark Linimon freebsd_committer freebsd_triage 2003-10-16 01:43:00 UTC 
State Changed
From-To: closed->open

This fix also contained an upgrade which was an attempt to 
fix the checksum.  However, it did not unbreak the port (which 
was indeed broken before, leading to my being careless about this 
commit; as Maxwell Smart used to say, "sorry about that, chief".) 

In any case, from the PR: 

New distfile 9/13.  "Changes from TINKER 4.0 include some new force 
field parameter sets, improvements to rigid body dynamics, a 
Nose-Hoover thermostat, and numerous minor additions and bug fixes." 

However, the compilation fails in sockets.c with an undefined 
ref to <jni.h>.  This is part of: "an interface between TINKER Fortran 
code and FFE Java objects used for socket based communication." 

Some interested party is going to have to take up this one, I'm 
afraid, as I have no idea what is involved.
Comment 4 Mark Linimon freebsd_committer freebsd_triage 2003-10-16 01:58:12 UTC 
State Changed
From-To: open->closed

Closed after reopening so I could add the forced commit 
message, after being (correctly) chastised for leaving 
it without a rationale for the code change in the first place. 
(It's still broken, just for a different reason; but now 
the cvs log says so correctly).