Bug 135863 - [NEW PORT]biology/pycogent:A toolkit for statistical analysis of biological sequences
Summary: [NEW PORT]biology/pycogent:A toolkit for statistical analysis of biological s...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Martin Wilke
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2009-06-20 14:50 UTC by wenheping
Modified: 2009-06-22 13:50 UTC (History)
0 users

See Also:


Attachments
file.shar (43.35 KB, text/plain)
2009-06-20 14:50 UTC, wenheping
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Description wenheping 2009-06-20 14:50:03 UTC
PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.

WWW:    http://pycogent.sourceforge.net/

Fix: Patch attached with submission follows:
Comment 1 Edwin Groothuis freebsd_committer 2009-06-20 14:50:14 UTC
Responsible Changed
From-To: freebsd-ports-bugs->miwi

miwi@ wants his PRs (via the GNATS Auto Assign Tool)
Comment 2 Martin Wilke freebsd_committer 2009-06-22 13:46:56 UTC
State Changed
From-To: open->closed

New port added. Thanks!
Comment 3 dfilter service freebsd_committer 2009-06-22 13:47:10 UTC
miwi        2009-06-22 12:46:56 UTC

  FreeBSD ports repository

  Modified files:
    biology              Makefile 
  Added files:
    biology/pycogent     Makefile distinfo pkg-descr pkg-plist 
  Log:
  PyCogent is a software library for genomic biology. It is a fully integrated
  and thoroughly tested framework for: controlling third-party applications;
  devising workflows; querying databases; conducting novel probabilistic
  analyses of biological sequence evolution; and generating publication quality
  graphics. It is distinguished by many unique built-in capabilities (such as
  true codon alignment) and the frequent addition of entirely new methods for
  the analysis of genomic data.
  
  WWW:    http://pycogent.sourceforge.net/
  
  PR:             ports/135863
  Submitted by:   Wen Heping <wenheping at gmail.com>
  
  Revision  Changes    Path
  1.109     +1 -0      ports/biology/Makefile
  1.1       +28 -0     ports/biology/pycogent/Makefile (new)
  1.1       +3 -0      ports/biology/pycogent/distinfo (new)
  1.1       +9 -0      ports/biology/pycogent/pkg-descr (new)
  1.1       +846 -0    ports/biology/pycogent/pkg-plist (new)
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