The current numpy in ports (1.6.2) doesn't build with python3.3. Fix: Apply the following patch to the port: ---------- patch ---------- How-To-Repeat: Try building numpy 1.6.2 with python3.3. It fails; In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0 : numpy/core/src/multiarray/scalartypes.c.src: In function 'string_arrtype_new': numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' h as no member named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0 : numpy/core/src/multiarray/scalartypes.c.src: In function 'unicode_arrtype_new': numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' h as no member named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:11:0 : numpy/core/src/multiarray/scalarapi.c: In function 'PyArray_Scalar': numpy/core/src/multiarray/scalarapi.c:704:16: error: 'PyUnicodeObject' has no m ember named 'str' numpy/core/src/multiarray/scalarapi.c:705:16: error: 'PyUnicodeObject' has no m ember named 'defenc' numpy/core/src/multiarray/scalarapi.c:706:16: error: 'PyUnicodeObject' has no m ember named 'hash' numpy/core/src/multiarray/scalarapi.c:718:16: error: 'PyUnicodeObject' has no m ember named 'str' numpy/core/src/multiarray/scalarapi.c:719:16: error: 'PyUnicodeObject' has no m ember named 'str' numpy/core/src/multiarray/scalarapi.c:720:16: error: 'PyUnicodeObject' has no m ember named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:14:0 : numpy/core/src/multiarray/arraytypes.c.src: In function 'VOID_getitem': numpy/core/src/multiarray/arraytypes.c.src:591:35: warning: assignment from inc ompatible pointer type [enabled by default] In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:25:0 : numpy/core/src/multiarray/getset.c: In function 'array_data_get': numpy/core/src/multiarray/getset.c:293:5: warning: passing argument 1 of 'PyMem oryView_FromObject' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/memoryobject.h:23:24: note: expected 'struct PyOb ject *' but argument is of type 'struct PyArrayObject *' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:39:0 : numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_subscript': numpy/core/src/multiarray/nditer_pywrap.c:2264:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObj ect *' but argument is of type 'struct PySliceObject *' numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_ass_subscript': numpy/core/src/multiarray/nditer_pywrap.c:2314:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *' In file included from numpy/core/src/private/npy_config.h:4:0, from numpy/core/src/multiarray/common.c:8, from numpy/core/src/multiarray/multiarraymodule_onefile.c:8: build/src.freebsd-9.1-RELEASE-p1-amd64-3.3/numpy/core/include/numpy/config.h:27:0: warning: "HAVE_LOG2" redefined [enabled by default] /usr/local/include/python3.3m/pyconfig.h:518:0: note: this is the location of the previous definition In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0: numpy/core/src/multiarray/scalartypes.c.src: In function 'string_arrtype_new': numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' has no member named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:10:0: numpy/core/src/multiarray/scalartypes.c.src: In function 'unicode_arrtype_new': numpy/core/src/multiarray/scalartypes.c.src:2326:45: error: 'PyUnicodeObject' has no member named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:11:0: numpy/core/src/multiarray/scalarapi.c: In function 'PyArray_Scalar': numpy/core/src/multiarray/scalarapi.c:704:16: error: 'PyUnicodeObject' has no member named 'str' numpy/core/src/multiarray/scalarapi.c:705:16: error: 'PyUnicodeObject' has no member named 'defenc' numpy/core/src/multiarray/scalarapi.c:706:16: error: 'PyUnicodeObject' has no member named 'hash' numpy/core/src/multiarray/scalarapi.c:718:16: error: 'PyUnicodeObject' has no member named 'str' numpy/core/src/multiarray/scalarapi.c:719:16: error: 'PyUnicodeObject' has no member named 'str' numpy/core/src/multiarray/scalarapi.c:720:16: error: 'PyUnicodeObject' has no member named 'length' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:14:0: numpy/core/src/multiarray/arraytypes.c.src: In function 'VOID_getitem': numpy/core/src/multiarray/arraytypes.c.src:591:35: warning: assignment from incompatible pointer type [enabled by default] In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:25:0: numpy/core/src/multiarray/getset.c: In function 'array_data_get': numpy/core/src/multiarray/getset.c:293:5: warning: passing argument 1 of 'PyMemoryView_FromObject' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/memoryobject.h:23:24: note: expected 'struct PyObject *' but argument is of type 'struct PyArrayObject *' In file included from numpy/core/src/multiarray/multiarraymodule_onefile.c:39:0: numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_subscript': numpy/core/src/multiarray/nditer_pywrap.c:2264:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *' numpy/core/src/multiarray/nditer_pywrap.c: In function 'npyiter_ass_subscript': numpy/core/src/multiarray/nditer_pywrap.c:2314:29: warning: passing argument 1 of 'PySlice_GetIndices' from incompatible pointer type [enabled by default] /usr/local/include/python3.3m/sliceobject.h:38:17: note: expected 'struct PyObject *' but argument is of type 'struct PySliceObject *' *** [do-build] Error code 1 Stop in /usr/ports/math/py-numpy. *** [build] Error code 1 Stop in /usr/ports/math/py-numpy.
Responsible Changed From-To: freebsd-ports-bugs->freebsd-python freebsd-python@ wants this port PRs (via the GNATS Auto Assign Tool)
Maintainer of math/py-numpy, Please note that PR ports/178256 has just been submitted. If it contains a patch for an upgrade, an enhancement or a bug fix you agree on, reply to this email stating that you approve the patch and a committer will take care of it. The full text of the PR can be found at: http://www.freebsd.org/cgi/query-pr.cgi?pr=ports/178256 -- Edwin Groothuis via the GNATS Auto Assign Tool edwin@FreeBSD.org
State Changed From-To: open->feedback Awaiting maintainers feedback (via the GNATS Auto Assign Tool)
Thanks for the patch and sorry for the delay. I don't think you can remove PORTEPOCH. Otherwise I approve this patch. -- Li-Lun Wang On Tue, Apr 30, 2013 at 5:00 AM, Edwin Groothuis <edwin@freebsd.org> wrote: > Maintainer of math/py-numpy, > > Please note that PR ports/178256 has just been submitted. > > If it contains a patch for an upgrade, an enhancement or a bug fix > you agree on, reply to this email stating that you approve the patch > and a committer will take care of it. > > The full text of the PR can be found at: > http://www.freebsd.org/cgi/query-pr.cgi?pr=ports/178256 > > -- > Edwin Groothuis via the GNATS Auto Assign Tool > edwin@FreeBSD.org
Author: demon Date: Mon May 20 06:20:28 2013 New Revision: 318575 URL: http://svnweb.freebsd.org/changeset/ports/318575 Log: Update to version 1.7.0 (and unbreak with python-3.3). PR: 178256 Submitted by: Roland Smith <rsmith@xs4all.nl> Approved by: maintainer Modified: head/math/py-numpy/Makefile head/math/py-numpy/distinfo head/math/py-numpy/files/patch-numpy-distutils-system_info.py head/math/py-numpy/pkg-descr head/math/py-numpy/pkg-plist Modified: head/math/py-numpy/Makefile ============================================================================== --- head/math/py-numpy/Makefile Mon May 20 06:14:09 2013 (r318574) +++ head/math/py-numpy/Makefile Mon May 20 06:20:28 2013 (r318575) @@ -1,13 +1,8 @@ -# New ports collection makefile for: numpy -# Date created: 24 July 2006 -# Whom: Tony Maher -# +# Created by: Tony Maher # $FreeBSD$ -# PORTNAME= numpy -PORTVERSION= 1.6.2 -PORTREVISION= 1 +PORTVERSION= 1.7.0 PORTEPOCH= 1 CATEGORIES= math python MASTER_SITES= http://docs.scipy.org/doc/${DISTNAME:C/\..$/.0/}/:doc \ @@ -75,8 +70,8 @@ PYDISTUTILS_CONFIGUREARGS+= --fcompiler= PYDISTUTILS_BUILDARGS+= --fcompiler=gnu95 post-extract: - @${CP} ${DISTDIR}/numpy-ref.pdf ${WRKDIR} - @${CP} ${DISTDIR}/numpy-user.pdf ${WRKDIR} + @${CP} ${DISTDIR}/numpy-ref-${PORTVERSION}.pdf ${WRKDIR} + @${CP} ${DISTDIR}/numpy-user-${PORTVERSION}.pdf ${WRKDIR} post-patch: @${REINPLACE_CMD} -e "s+%%FC%%+${FC}+" ${WRKSRC}/numpy/distutils/fcompiler/gnu.py @@ -118,8 +113,8 @@ post-install: ${INSTALL_MAN} ${WRKSRC}/numpy/f2py/f2py.1 ${MAN1PREFIX}/man/man1 .if !defined(NOPORTDOCS) @${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKDIR}/numpy-ref.pdf ${DOCSDIR} - ${INSTALL_DATA} ${WRKDIR}/numpy-user.pdf ${DOCSDIR} + ${INSTALL_DATA} ${WRKDIR}/numpy-ref-${PORTVERSION}.pdf ${DOCSDIR} + ${INSTALL_DATA} ${WRKDIR}/numpy-user-${PORTVERSION}.pdf ${DOCSDIR} .endif .if defined(WITH_FIXED_FENV) @if [ "`${PKG_VERSION} -t \"\`\\\`${CC} -print-prog-name=as\\\` --version | ${AWK} 'NR==1 {sub(/\(GNU Binutils\)/,""); print $$3}'\`\" 2.18.49`" = ">" ] ; then \ Modified: head/math/py-numpy/distinfo ============================================================================== --- head/math/py-numpy/distinfo Mon May 20 06:14:09 2013 (r318574) +++ head/math/py-numpy/distinfo Mon May 20 06:20:28 2013 (r318575) @@ -1,9 +1,9 @@ -SHA256 (numpy-1.6.2.tar.gz) = 0b83d96ab79711b548470b7aeee1272c4ba8fcbba6586a67116b566a21ed16c6 -SIZE (numpy-1.6.2.tar.gz) = 2585329 -SHA256 (numpy-ref.pdf) = cbeea9b1395e0576bbd256c5de11886c63321d434785c6777df7bdd50109ba9f -SIZE (numpy-ref.pdf) = 6106335 -SHA256 (numpy-user.pdf) = d8d51913cb494228f69c5f16d659b8539cbd04c6e584fde72c00c382e86eea8f -SIZE (numpy-user.pdf) = 474664 +SHA256 (numpy-1.7.0.tar.gz) = f4fa70b7edbab65ee6432eb63743f5489f1919c614632b20b2fb45aa7e682ac6 +SIZE (numpy-1.7.0.tar.gz) = 2832457 +SIZE (numpy-ref-1.7.0.pdf) = 5161456 +SHA256 (numpy-ref-1.7.0.pdf) = 0581709ef96441953404bc1369d70117b83359aff94f44779b960bed30a156d7 +SIZE (numpy-user-1.7.0.pdf) = 404104 +SHA256 (numpy-user-1.7.0.pdf) = 0c8dc1d53cc057a66139039dbaaf65499687cf64e72af5852eb96d9c3cd3ab18 SHA256 (i387/fenv.c?p=203441) = c7c558ddb6ab6604c83062fe0655d3ce8cf4d60edb4c9c82777962c49d23ca54 SIZE (i387/fenv.c?p=203441) = 4791 SHA256 (i387/fenv.h?p=203441) = 40c72f3cdd6990076394056e06461e1daeb6087b6a32f1962d3c33b0a00c0e0d Modified: head/math/py-numpy/files/patch-numpy-distutils-system_info.py ============================================================================== --- head/math/py-numpy/files/patch-numpy-distutils-system_info.py Mon May 20 06:14:09 2013 (r318574) +++ head/math/py-numpy/files/patch-numpy-distutils-system_info.py Mon May 20 06:20:28 2013 (r318575) @@ -1,9 +1,9 @@ ---- numpy/distutils/system_info.py.orig 2011-07-01 22:31:13.000000000 +0100 -+++ numpy/distutils/system_info.py 2011-11-26 09:54:54.000000000 +0000 -@@ -910,8 +910,8 @@ +--- numpy/distutils/system_info.py.orig 2013-02-09 22:04:56.000000000 +0100 ++++ numpy/distutils/system_info.py 2013-03-22 21:01:34.000000000 +0100 +@@ -983,8 +983,8 @@ dir_env_var = 'ATLAS' - _lib_names = ['f77blas','cblas'] - if sys.platform[:7]=='freebsd': + _lib_names = ['f77blas', 'cblas'] + if sys.platform[:7] == 'freebsd': - _lib_atlas = ['atlas_r'] - _lib_lapack = ['alapack_r'] + _lib_atlas = ['atlas'] @@ -11,11 +11,3 @@ else: _lib_atlas = ['atlas'] _lib_lapack = ['lapack'] -@@ -939,6 +939,7 @@ - atlas = self.check_libs2(d,atlas_libs,[]) - lapack_atlas = self.check_libs2(d,['lapack_atlas'],[]) - if atlas is not None: -+ atlas['libraries'].extend(['gfortran', 'm', 'pthread']) - lib_dirs2 = [d] + self.combine_paths(d,['atlas*','ATLAS*']) - for d2 in lib_dirs2: - lapack = self.check_libs2(d2,lapack_libs,[]) Modified: head/math/py-numpy/pkg-descr ============================================================================== --- head/math/py-numpy/pkg-descr Mon May 20 06:14:09 2013 (r318574) +++ head/math/py-numpy/pkg-descr Mon May 20 06:20:28 2013 (r318575) @@ -15,4 +15,4 @@ and can also be used to replace numarray Note: Development for Numeric has ceased, and users should transisition to NumPy as quickly as possible. -WWW: http://numpy.scipy.org/ +WWW: http://www.numpy.org/ Modified: head/math/py-numpy/pkg-plist ============================================================================== --- head/math/py-numpy/pkg-plist Mon May 20 06:14:09 2013 (r318574) +++ head/math/py-numpy/pkg-plist Mon May 20 06:20:28 2013 (r318575) @@ -1,68 +1,100 @@ bin/f2py %%PYTHON_SITELIBDIR%%/numpy/__config__.py -%%PYTHON_SITELIBDIR%%/numpy/__config__.pyc -%%PYTHON_SITELIBDIR%%/numpy/__config__.pyo %%PYTHON_SITELIBDIR%%/numpy/__init__.py -%%PYTHON_SITELIBDIR%%/numpy/__init__.pyc -%%PYTHON_SITELIBDIR%%/numpy/__init__.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_import_tools.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_import_tools.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/add_newdocs.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/add_newdocs.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/ctypeslib.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/dual.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/matlib.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setup.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setupscons.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/setupscons.cpython-33.pyo +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-33.pyc +%%PYTHON_SITELIBDIR%%/numpy/__pycache__/version.cpython-33.pyo %%PYTHON_SITELIBDIR%%/numpy/_import_tools.py -%%PYTHON_SITELIBDIR%%/numpy/_import_tools.pyc 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State Changed From-To: feedback->closed Port updated, thanks!
----- Forwarded message from Roland Smith <rsmith@xs4all.nl> ----- Date: Mon, 20 May 2013 19:48:40 +0200 From: Roland Smith <rsmith@xs4all.nl> To: demon@FreeBSD.org Cc: llwang@infor.org, freebsd-python@FreeBSD.org Subject: Re: ports/178256: [PATCH] Unbreak math/py-numpy with python 3.3 and update to 1.7.0. User-Agent: Mutt/1.5.21 (2010-09-15) There is a mistake in the pkg_plist. It contains several __pycache__ directories from a python3.3 build. Those should not be in the plist when the port is built for python2. But I don't know how to handle that. Roland -- R.F.Smith http://rsmith.home.xs4all.nl/ [plain text _non-HTML_ PGP/GnuPG encrypted/signed email much appreciated] pgp: 1A2B 477F 9970 BA3C 2914 B7CE 1277 EFB0 C321 A725 (KeyID: C321A725) ----- End forwarded message -----