biology/consed: workbench for sequence assemblies
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
Although these programs are licensed freely for academic and nonprofit purposes,
users have to contact the authors to obtain the tarballs.
Created attachment 144093 [details]
svn diff for biology/consed
Created attachment 144094 [details]
svn diff for biology/phrap
Created attachment 144095 [details]
svn diff for biology/phred
this should have been 3 separate PRs
The three distfiles are restricted in distribution. I'll try to get access and
test the patches, then commit the updates.
Got contact with the restricted distfile administration, update seems possible.
Waiting to receive the distfiles, then:
Tests with those distfiles.
Got the ACK to get the academic license.
Need to find license form, fill it out and submit it.
License agreement was sent to distsite, consed and phrap received, waiting
Kurt, if you at least commit consed, you get mzaki's ports off this list:
> Kurt, if you at least commit consed, you get mzaki's ports off this list:
consed depends on phrab and phred, so we're in a bind here. I've poked
the distsite again.
ah, right, I read the report backwards.
got phred, will test with all patches.
A commit references this bug:
Date: Sat Aug 23 18:05:03 UTC 2014
New revision: 365765
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
Submitted by: email@example.com (maintainer)
Thank you for the patches, committed finally!