Bug 199066 - [maintainer update] biology/hmmer: Clean up and adopt
Summary: [maintainer update] biology/hmmer: Clean up and adopt
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Dmitry Marakasov
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-03-31 13:58 UTC by Jason W. Bacon
Modified: 2015-04-02 15:42 UTC (History)
1 user (show)

See Also:

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2015-03-31 13:58 UTC, Jason W. Bacon 		no flags Details
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Description Jason W. Bacon freebsd_committer freebsd_triage 2015-03-31 13:58:05 UTC 
Created attachment 155058 [details]
Unified diff

Remove deprecated PVM support (to be replaced by MPI in the future).

Add --with-sse for x86 architectures, without which hmmerscan runs about 100x slower and leaks memory.
Comment 1 commit-hook freebsd_committer freebsd_triage 2015-04-02 15:42:06 UTC 
A commit references this bug:

Author: amdmi3
Date: Thu Apr  2 15:41:32 UTC 2015
New revision: 383013
URL: https://svnweb.freebsd.org/changeset/ports/383013

Log:
  - Remove deprecated option
  - Tweak compiler flags
  - Add LICENSE
  - Pass maintainership to submitter

  PR:		199066
  Submitted by:	jwbacon@tds.net

Changes:
  head/biology/hmmer/Makefile