Bug 203295 - [new port] biology/fasttree: Very simple port for phylogenetic trees from sequence alignments
Summary: [new port] biology/fasttree: Very simple port for phylogenetic trees from seq...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Ruslan Makhmatkhanov
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-09-23 20:02 UTC by Jason W. Bacon
Modified: 2015-09-25 18:48 UTC (History)
1 user (show)

See Also:

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2015-09-23 20:02 UTC, Jason W. Bacon 		no flags Details
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Description Jason W. Bacon freebsd_committer freebsd_triage 2015-09-23 20:02:10 UTC 
Created attachment 161314 [details]
SHAR archive

FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/
Comment 1 commit-hook freebsd_committer freebsd_triage 2015-09-25 18:34:43 UTC 
A commit references this bug:

Author: rm
Date: Fri Sep 25 18:34:30 UTC 2015
New revision: 397848
URL: https://svnweb.freebsd.org/changeset/ports/397848

Log:
  FastTree infers approximately-maximum-likelihood phylogenetic trees from
  alignments of nucleotide or protein sequences. FastTree can handle alignments
  with up to a million of sequences in a reasonable amount of time and memory.

  WWW: http://www.microbesonline.org/fasttree/

  PR:		203295
  Submitted by:	Jason Bacon <jwbacon@tds.net>

Changes:
  head/biology/Makefile
  head/biology/fasttree/
  head/biology/fasttree/Makefile
  head/biology/fasttree/distinfo
  head/biology/fasttree/pkg-descr
Comment 2 Ruslan Makhmatkhanov freebsd_committer freebsd_triage 2015-09-25 18:48:27 UTC 
Committed, thank you!