Bug 207997 - [NEW PORT] biology/slclust: Single-linkage clustering with Jaccard similarity
Summary: [NEW PORT] biology/slclust: Single-linkage clustering with Jaccard similarity
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Raphael Kubo da Costa
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-03-14 19:41 UTC by Jason W. Bacon
Modified: 2016-03-23 11:03 UTC (History)
1 user (show)

See Also:

Attachments
Shar archive (3.45 KB, text/plain)
2016-03-15 21:15 UTC, Jason W. Bacon 		rakuco: maintainer-approval+
Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Jason W. Bacon freebsd_committer freebsd_triage 2016-03-14 19:41:27 UTC 
Slclust is a utility that performs single-linkage clustering with the option of
applying a Jaccard similarity coefficient to break weakly bound clusters into
distinct clusters.

WWW: http://sourceforge.net/projects/slclust/

Slclust is another dependency for the upcoming Trinity genomics pipeline.

portlint: OK (looks fine.)
testport: OK (poudriere: {10.1,9.3}-RELEASE {amd64,i386})
Comment 1 Jason W. Bacon freebsd_committer freebsd_triage 2016-03-15 21:15:24 UTC 
Created attachment 168258 [details]
Shar archive
Comment 2 commit-hook freebsd_committer freebsd_triage 2016-03-23 11:01:18 UTC 
A commit references this bug:

Author: rakuco
Date: Wed Mar 23 11:00:45 UTC 2016
New revision: 411697
URL: https://svnweb.freebsd.org/changeset/ports/411697

Log:
  New port: biology/slclust.

  Slclust is a utility that performs single-linkage clustering with the option of
  applying a Jaccard similarity coefficient to break weakly bound clusters into
  distinct clusters.

  WWW: http://sourceforge.net/projects/slclust/

  PR:		207997
  Submitted by:	Jason Bacon <bacon4000@gmail.com>

Changes:
  head/biology/Makefile
  head/biology/slclust/
  head/biology/slclust/Makefile
  head/biology/slclust/distinfo
  head/biology/slclust/files/
  head/biology/slclust/files/patch-include_cmd__line__opts.h
  head/biology/slclust/files/patch-src_Makefile
  head/biology/slclust/pkg-descr
Comment 3 Raphael Kubo da Costa freebsd_committer freebsd_triage 2016-03-23 11:03:45 UTC 
Committed, thanks.