Bug 208998 - [NEW PORT] biology/diamond: BLAST-compatible local sequence aligner
Summary: [NEW PORT] biology/diamond: BLAST-compatible local sequence aligner
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Wen Heping
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-04-23 15:49 UTC by Joseph Mingrone
Modified: 2016-05-06 08:48 UTC (History)
1 user (show)

See Also:

Attachments
shar for new port biology/diamond (3.13 KB, text/plain)
2016-04-23 15:49 UTC, Joseph Mingrone 		no flags Details
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Description Joseph Mingrone freebsd_committer freebsd_triage 2016-04-23 15:49:31 UTC 
Created attachment 169603 [details]
shar for new port biology/diamond

portlint: OK
testport: OK (poudriere: 9.3-RELEASE-p39, amd64) [1]
testport: OK (poudriere: 10.3-RELEASE,    amd64) [2]

[1] http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-04-23_12h41m37s/logs/diamond-0.7.12.log

[2] http://pkg.awarnach.mathstat.dal.ca/data/103amd64-default/2016-04-23_12h43m15s/logs/diamond-0.7.12.log
Comment 1 commit-hook freebsd_committer freebsd_triage 2016-05-06 08:45:09 UTC 
A commit references this bug:

Author: wen
Date: Fri May  6 08:45:03 UTC 2016
New revision: 414686
URL: https://svnweb.freebsd.org/changeset/ports/414686

Log:
  DNA query sequences against a protein reference database (BLASTP and BLASTX
  alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
  typical sensitivity of 90-99% relative to BLAST depending on the data and
  settings.

  WWW: http://ab.inf.uni-tuebingen.de/software/diamond/

  PR:		208998
  Submitted by:	jrm@ftfl.ca

Changes:
  head/biology/Makefile
  head/biology/diamond/
  head/biology/diamond/Makefile
  head/biology/diamond/distinfo
  head/biology/diamond/files/
  head/biology/diamond/files/patch-CMakeLists.txt
  head/biology/diamond/pkg-descr