Bug 228776 - [NEW PORT] biology/infernal: Search sequence databases for structural RNA homologs
Summary: [NEW PORT] biology/infernal: Search sequence databases for structural RNA hom...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: freebsd-ports-bugs mailing list
URL:
Keywords:
Depends on:
Blocks: 228758
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Reported: 2018-06-06 06:46 UTC by Motomichi Matsuzaki
Modified: 2018-06-06 15:16 UTC (History)
0 users

See Also:


Attachments
svn diff (6.49 KB, patch)
2018-06-06 06:46 UTC, Motomichi Matsuzaki
no flags Details | Diff

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Description Motomichi Matsuzaki 2018-06-06 06:46:01 UTC
Created attachment 194041 [details]
svn diff

Infernal is a tool for searching DNA sequence database for RNA structure and sequence similarities. The Rfam database of RNA families is based on Infernal, and we can search DNA sequences for structural homologs of Rfam families.

WWW: http://eddylab.org/infernal/


Tested by: poudriere testport (amd64/i386 11.1/10.4) & make test (amd64/i386 11.1)
Comment 1 commit-hook freebsd_committer 2018-06-06 15:15:49 UTC
A commit references this bug:

Author: krion
Date: Wed Jun  6 15:15:19 UTC 2018
New revision: 471850
URL: https://svnweb.freebsd.org/changeset/ports/471850

Log:
  Add new port: biology/infernal

  Infernal is a tool for searching DNA sequence database for RNA
  structure and sequence similarities. The Rfam database of RNA
  families is based on Infernal, and we can search DNA sequences for
  structural homologs of Rfam families.

  WWW: http://eddylab.org/infernal/

  PR:		228776
  Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>

Changes:
  head/biology/Makefile
  head/biology/infernal/
  head/biology/infernal/Makefile
  head/biology/infernal/distinfo
  head/biology/infernal/files/
  head/biology/infernal/files/patch-configure
  head/biology/infernal/pkg-descr
  head/biology/infernal/pkg-plist