Bug 229180 - [NEW PORT] biology/exonerate: Generic tool for sequence alignment
Summary: [NEW PORT] biology/exonerate: Generic tool for sequence alignment
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Yuri Victorovich
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-06-20 13:38 UTC by Motomichi Matsuzaki
Modified: 2018-07-13 07:02 UTC (History)
1 user (show)

See Also:


Attachments
svn diff (3.50 KB, patch)
2018-06-20 13:38 UTC, Motomichi Matsuzaki
no flags Details | Diff

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Description Motomichi Matsuzaki 2018-06-20 13:38:45 UTC
Created attachment 194427 [details]
svn diff

Exonerate is a tool for various types of pairwise sequence comparison.
It allows us to align sequences using many alignment models including
est2genome, protein2genome, and so on.

WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate

Tested by: poudriere testport & make test (amd64/i386 11.1/10.4)
Comment 1 commit-hook freebsd_committer 2018-07-13 07:02:47 UTC
A commit references this bug:

Author: yuri
Date: Fri Jul 13 07:02:18 UTC 2018
New revision: 474558
URL: https://svnweb.freebsd.org/changeset/ports/474558

Log:
  New port: biology/exonerate: Generic tool for sequence alignment

  PR:		229180
  Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>

Changes:
  head/biology/Makefile
  head/biology/exonerate/
  head/biology/exonerate/Makefile
  head/biology/exonerate/distinfo
  head/biology/exonerate/pkg-descr
  head/biology/exonerate/pkg-plist
Comment 2 Yuri Victorovich freebsd_committer 2018-07-13 07:02:54 UTC
Committed with small changes.
Thank you for your contribution!