Bug 229480 - [NEW PORT] biology/stringtie: Transcript assembly and quantification for RNA-seq
Summary: [NEW PORT] biology/stringtie: Transcript assembly and quantification for RNA-seq
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Some People
Assignee: Yuri Victorovich
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-07-03 03:38 UTC by Motomichi Matsuzaki
Modified: 2018-07-11 21:33 UTC (History)
1 user (show)

See Also:


Attachments
svn diff (8.24 KB, patch)
2018-07-03 03:38 UTC, Motomichi Matsuzaki
no flags Details | Diff

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Description Motomichi Matsuzaki 2018-07-03 03:38:56 UTC
Created attachment 194846 [details]
svn diff

StringTie version 1.3.4d

Citation:
Pertea et al. (2015) StringTie enables improved reconstruction of a
transcriptome from RNA-seq reads.
Nature Biotechnology 33: 290-295 doi:10.1038/nbt.3122

WWW: http://www.ccb.jhu.edu/software/stringtie/

Tested by: poudriere testport (amd64/i386 11.1/10.4)
Comment 1 commit-hook freebsd_committer 2018-07-11 21:32:53 UTC
A commit references this bug:

Author: yuri
Date: Wed Jul 11 21:32:41 UTC 2018
New revision: 474480
URL: https://svnweb.freebsd.org/changeset/ports/474480

Log:
  New port: biology/stringtie: Transcript assembly and quantification for RNA-seq

  PR:		229480
  Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>

Changes:
  head/biology/Makefile
  head/biology/stringtie/
  head/biology/stringtie/Makefile
  head/biology/stringtie/distinfo
  head/biology/stringtie/files/
  head/biology/stringtie/files/patch-Makefile
  head/biology/stringtie/files/patch-gclib_GIntHash.hh
  head/biology/stringtie/files/patch-samtools-0.1.18_Makefile
  head/biology/stringtie/files/patch-samtools-0.1.18_bam__aux.c
  head/biology/stringtie/pkg-descr
Comment 2 Yuri Victorovich freebsd_committer 2018-07-11 21:33:28 UTC
Committed.
Thank you for your contribution!