Bug 229815 - math/py-networkx: Update to 2.1
Summary: math/py-networkx: Update to 2.1
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Yuri Victorovich
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-07-16 23:14 UTC by Jason W. Bacon
Modified: 2018-08-20 07:40 UTC (History)
2 users (show)

See Also:
dikshie: maintainer-feedback+

Attachments
patch (4.12 KB, patch)
2018-08-20 04:55 UTC, Yuri Victorovich 		yuri: maintainer-approval? (dikshie)
 Details | Diff
View All Add an attachment (proposed patch, testcase, etc.)

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Description Jason W. Bacon freebsd_committer freebsd_triage 2018-07-16 23:14:29 UTC 
Might it be possible to upgrade to 2.1 at this point?

If there are compatibility issues, how about a py-networkx2 port?

I'm working on a port of the MARVEL genome assembler, which requires
py36-networkx 2.1.

checking for python3.6 module networkx... yes
checking for version 2.1 or higher of networkx... no
configure: error: You need at least version 2.1 of the networkx Python module.
===>  Script "configure" failed unexpectedly.
Please report the problem to jwb@FreeBSD.org [maintainer] and attach the
"/usr/ports/wip/marvel/work/MARVEL-1f693baf8420c2121cc40d18ed2088c6e81a713b/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1

Thanks...
Comment 1 Yuri Victorovich freebsd_committer freebsd_triage 2018-08-20 04:55:27 UTC 
Created attachment 196372 [details]
patch
Comment 2 Yuri Victorovich freebsd_committer freebsd_triage 2018-08-20 04:58:02 UTC 
science/py-pymatgen update depends on it.
Comment 3 dikshie 2018-08-20 06:13:13 UTC 
(In reply to Yuri Victorovich from comment #2)

I tried. 
Looks good for me. 
please commit. 

Many thanks for your work!
Comment 4 Yuri Victorovich freebsd_committer freebsd_triage 2018-08-20 07:38:56 UTC 
(In reply to dikshie from comment #3)

Thank you, Mohamad, for quick approval!
Comment 5 Yuri Victorovich freebsd_committer freebsd_triage 2018-08-20 07:39:40 UTC 
Committed.
Comment 6 commit-hook freebsd_committer freebsd_triage 2018-08-20 07:40:35 UTC 
A commit references this bug:

Author: yuri
Date: Mon Aug 20 07:39:33 UTC 2018
New revision: 477632
URL: https://svnweb.freebsd.org/changeset/ports/477632

Log:
  math/py-networkx: Update 1.10 -> 2.1

  PR:		229815
  Reported by:	jwb
  Approved by:	dikshie@sfc.wide.ad.jp (maintainer)

Changes:
  head/math/py-networkx/Makefile
  head/math/py-networkx/distinfo
  head/math/py-networkx/files/patch-setup.py