The port sets CONFIGURE_ARGS twice which results in --with-python never being
passed to the build.
CONFIGURE_ARGS= --enable-shared --disable-static
The build appears to succeed anyway, so maybe --with-python is not really
Thanks for reporting this!
A commit references this bug:
Date: Thu Jan 17 05:59:38 UTC 2019
New revision: 490524
science/coot: Remove the unused CONFIGURE_ARGS line
Reported by: tobik