See the log URL. Attributes 'zeroext and signext' are incompatible! ptr @omp_get_proc_bind fatal error: error in backend: Broken module found, compilation aborted! PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. Stack dump: 0. Program arguments: /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/zstd/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/tinyexpr -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/microtar -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simde -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/simd -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/gzstream -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/alp -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/cacode -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ksw2 -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/xxhash -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/lib/ips4o -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/.build/lib/mmseqs/generated -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/alignment -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/clustering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/multihit -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/prefiltering -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/linclust -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/taxonomy -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/util -I/wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fsigned-char -D_WITH_GETLINE -std=c++1y -stdlib=libc++ -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp=libomp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /wrkdirs/usr/ports/biology/metaeuk/work/metaeuk-6-a5d39d9/lib/mmseqs/src/commons/CommandCaller.cpp 1. <eof> parser at end of file 2. Code generation #0 0x0000000015bb187c (/usr/bin/c+++0x15bb187c) #1 0x0000000015baf150 (/usr/bin/c+++0x15baf150) #2 0x0000000015b3d714 (/usr/bin/c+++0x15b3d714) #3 0x0000000015b3d67c (/usr/bin/c+++0x15b3d67c) #4 0x0000000015b96ac0 (/usr/bin/c+++0x15b96ac0) #5 0x0000000011bea550 (/usr/bin/c+++0x11bea550) #6 0x0000000015b488c0 (/usr/bin/c+++0x15b488c0) #7 0x0000000015b4874c (/usr/bin/c+++0x15b4874c) #8 0x000000001565b4ec (/usr/bin/c+++0x1565b4ec) #9 0x00000000155ba04c (/usr/bin/c+++0x155ba04c) #10 0x00000000155b2a0c (/usr/bin/c+++0x155b2a0c) #11 0x00000000127c7b98 (/usr/bin/c+++0x127c7b98) #12 0x0000000012b95bf0 (/usr/bin/c+++0x12b95bf0) #13 0x0000000013395afc (/usr/bin/c+++0x13395afc) #14 0x0000000012a84fe8 (/usr/bin/c+++0x12a84fe8) #15 0x0000000012b933f4 (/usr/bin/c+++0x12b933f4) #16 0x0000000012a845ec (/usr/bin/c+++0x12a845ec) #17 0x00000000129febf0 (/usr/bin/c+++0x129febf0) #18 0x0000000012b8cbc0 (/usr/bin/c+++0x12b8cbc0) #19 0x0000000011be9c24 (/usr/bin/c+++0x11be9c24) #20 0x0000000011bfaf70 (/usr/bin/c+++0x11bfaf70) #21 0x0000000012873384 (/usr/bin/c+++0x12873384) #22 0x0000000015b3d5d8 (/usr/bin/c+++0x15b3d5d8) #23 0x00000000128728f4 (/usr/bin/c+++0x128728f4) #24 0x000000001282ca08 (/usr/bin/c+++0x1282ca08) #25 0x000000001282cdcc (/usr/bin/c+++0x1282cdcc) #26 0x000000001284b194 (/usr/bin/c+++0x1284b194) #27 0x0000000011bfa4f4 (/usr/bin/c+++0x11bfa4f4) #28 0x00000008185374c8 __libc_start1 (/lib/libc.so.7+0x9a4c8) #29 0x0000000011be9290 (/usr/bin/c+++0x11be9290) c++: error: clang frontend command failed with exit code 70 (use -v to see invocation) FreeBSD clang version 16.0.6 (https://github.com/llvm/llvm-project.git llvmorg-16.0.6-0-g7cbf1a259152) Target: powerpc64le-unknown-freebsd15.0 Thread model: posix InstalledDir: /usr/bin c++: note: diagnostic msg: ********************
Here is a possibly relevant comment by the metaeuk upstream: https://github.com/soedinglab/metaeuk/issues/85#issuecomment-1888409021
Likely same as https://github.com/llvm/llvm-project/issues/63807
It does indeed look similar to the upstream bug, so openmp related. I see no resolution for the upstream bug yet, so for now there is not that much we can do.