Attachment #208452 for bug #241363

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Lines 26-31 LDFLAGS+= -lopenblas Link Here

(-)b/biology/gemma/Makefile (+2 lines)
26		26
27	OPTIONS_DEFINE= EXAMPLES	27	OPTIONS_DEFINE= EXAMPLES
28		28
		29	BROKEN= Conflict between math/gsl and math/cblas constant redeclarations
		30
29	pre-configure:	31	pre-configure:
30	@${REINPLACE_CMD} -e 's\|../bin/gemma\|../gemma\|' ${WRKSRC}/test/*.sh	32	@${REINPLACE_CMD} -e 's\|../bin/gemma\|../gemma\|' ${WRKSRC}/test/*.sh
31		33

Lines 2-9 Link Here

(-)b/math/gsl/Makefile (-2 / +1 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= gsl	4	PORTNAME= gsl
5	PORTVERSION= 2.5	5	PORTVERSION= 2.6
6	PORTREVISION= 1
7	CATEGORIES= math	6	CATEGORIES= math
8	MASTER_SITES= GNU	7	MASTER_SITES= GNU
9		8

Lines 1-3 Link Here

(-)b/math/gsl/distinfo (-3 / +3 lines)
1	TIMESTAMP = 1529158403	1	TIMESTAMP = 1566551853
2	SHA256 (gsl-2.5.tar.gz) = 0460ad7c2542caaddc6729762952d345374784100223995eb14d614861f2258d	2	SHA256 (gsl-2.6.tar.gz) = b782339fc7a38fe17689cb39966c4d821236c28018b6593ddb6fd59ee40786a8
3	SIZE (gsl-2.5.tar.gz) = 7303881	3	SIZE (gsl-2.6.tar.gz) = 7398548

Lines 19-24 include/gsl/gsl_block_uint.h Link Here

(-)b/math/gsl/pkg-plist (-2 / +20 lines)
19	include/gsl/gsl_block_ulong.h	19	include/gsl/gsl_block_ulong.h
20	include/gsl/gsl_block_ushort.h	20	include/gsl/gsl_block_ushort.h
21	include/gsl/gsl_bspline.h	21	include/gsl/gsl_bspline.h
		22	include/gsl/gsl_bst.h
		23	include/gsl/gsl_bst_avl.h
		24	include/gsl/gsl_bst_rb.h
		25	include/gsl/gsl_bst_types.h
22	include/gsl/gsl_cblas.h	26	include/gsl/gsl_cblas.h
23	include/gsl/gsl_cdf.h	27	include/gsl/gsl_cdf.h
24	include/gsl/gsl_chebyshev.h	28	include/gsl/gsl_chebyshev.h
Lines 213-218 include/gsl/gsl_splinalg.h Link Here
213	include/gsl/gsl_spline.h	217	include/gsl/gsl_spline.h
214	include/gsl/gsl_spline2d.h	218	include/gsl/gsl_spline2d.h
215	include/gsl/gsl_spmatrix.h	219	include/gsl/gsl_spmatrix.h
		220	include/gsl/gsl_spmatrix_char.h
		221	include/gsl/gsl_spmatrix_complex_double.h
		222	include/gsl/gsl_spmatrix_complex_float.h
		223	include/gsl/gsl_spmatrix_complex_long_double.h
		224	include/gsl/gsl_spmatrix_double.h
		225	include/gsl/gsl_spmatrix_float.h
		226	include/gsl/gsl_spmatrix_int.h
		227	include/gsl/gsl_spmatrix_long.h
		228	include/gsl/gsl_spmatrix_long_double.h
		229	include/gsl/gsl_spmatrix_short.h
		230	include/gsl/gsl_spmatrix_uchar.h
		231	include/gsl/gsl_spmatrix_uint.h
		232	include/gsl/gsl_spmatrix_ulong.h
		233	include/gsl/gsl_spmatrix_ushort.h
216	include/gsl/gsl_statistics.h	234	include/gsl/gsl_statistics.h
217	include/gsl/gsl_statistics_char.h	235	include/gsl/gsl_statistics_char.h
218	include/gsl/gsl_statistics_double.h	236	include/gsl/gsl_statistics_double.h
Lines 250-257 include/gsl/gsl_wavelet.h Link Here
250	include/gsl/gsl_wavelet2d.h	268	include/gsl/gsl_wavelet2d.h
251	lib/libgsl.a	269	lib/libgsl.a
252	lib/libgsl.so	270	lib/libgsl.so
253	lib/libgsl.so.23	271	lib/libgsl.so.25
254	lib/libgsl.so.23.1.0	272	lib/libgsl.so.25.0.0
255	lib/libgslcblas.a	273	lib/libgslcblas.a
256	lib/libgslcblas.so	274	lib/libgslcblas.so
257	lib/libgslcblas.so.0	275	lib/libgslcblas.so.0

Lines 23-28 TEST_DEPENDS= p5-Test-Class>=0.12:devel/p5-Test-Class \ Link Here

(-)b/math/p5-Math-GSL/Makefile (+2 lines)
23	USES= perl5	23	USES= perl5
24	USE_PERL5= modbuild	24	USE_PERL5= modbuild
25		25
		26	BROKEN= Does not work with gsl-2.6
		27
26	post-install:	28	post-install:
27	${FIND} ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/GSL/ -name "*.so" -exec ${STRIP_CMD} {} +	29	${FIND} ${STAGEDIR}${PREFIX}/${SITE_ARCH_REL}/auto/Math/GSL/ -name "*.so" -exec ${STRIP_CMD} {} +
28		30

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