Bug 241363 (gsl-2.6) - [exp-run] Upgrade math/gsl to 2.6
Summary: [exp-run] Upgrade math/gsl to 2.6
Status: Closed FIXED
Alias: gsl-2.6
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Tobias C. Berner
URL: https://github.com/freebsd/freebsd-po...
Keywords:
Depends on:
Blocks: 241187
  Show dependency treegraph
 
Reported: 2019-10-20 11:51 UTC by Tobias C. Berner
Modified: 2019-10-25 23:42 UTC (History)
0 users

See Also:
antoine: exp-run+


Attachments
v1 (2.94 KB, patch)
2019-10-20 11:51 UTC, Tobias C. Berner
no flags Details | Diff

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Description Tobias C. Berner freebsd_committer 2019-10-20 11:51:40 UTC
Created attachment 208452 [details]
v1

Hi there

I would like to ask for an exp-run to upgrade math/gsl to 2.6

The following ports have been marked broken:
- biology/gemma: there is a conflict between cblas headers included in gsl and math/cblas
- math/p5-Math-GSL: does not have support for gsl-2.6 (no upstream activity).

The patch is attached, and can also be found here:
https://people.freebsd.org/~tcberner/patches/gsl-2.6.v1.diff


mfg Tobias
Comment 1 Antoine Brodin freebsd_committer 2019-10-22 18:35:35 UTC
Exp-run seems fine.
Comment 2 commit-hook freebsd_committer 2019-10-25 23:42:25 UTC
A commit references this bug:

Author: tcberner
Date: Fri Oct 25 23:41:47 UTC 2019
New revision: 515671
URL: https://svnweb.freebsd.org/changeset/ports/515671

Log:
  math/gsl: update to 2.6

  - math/p5-Math-GSL does not seem to have any upstream activity to make it work with this version -> mark it broken
    - this also breaks the two consumers of this port

  - biology/gemma: has a conflict with cblas, and is makred broken.

  PR:		241363
  Exp-run by:	antoine

Changes:
  head/astro/gnuastro/Makefile
  head/astro/siril/Makefile
  head/audio/p5-Audio/Makefile
  head/audio/snd/Makefile
  head/benchmarks/flowgrind/Makefile
  head/biology/bcftools/Makefile
  head/biology/gemma/Makefile
  head/biology/viennarna/Makefile
  head/comms/gnuradio/Makefile
  head/editors/calligra/Makefile
  head/graphics/enblend/Makefile
  head/graphics/inkscape/Makefile
  head/graphics/krita/Makefile
  head/graphics/luminance-qt5/Makefile
  head/graphics/mandelbulber/Makefile
  head/graphics/nip2/Makefile
  head/graphics/pfstools/Makefile
  head/graphics/qgis/Makefile
  head/graphics/qgis-ltr/Makefile
  head/graphics/xaos/Makefile
  head/lang/algol68g/Makefile
  head/mail/bogofilter/Makefile
  head/mail/bogofilter-kc/Makefile
  head/mail/bogofilter-lmdb/Makefile
  head/mail/bogofilter-sqlite/Makefile
  head/mail/bogofilter-tc/Makefile
  head/math/asymptote/Makefile
  head/math/deal.ii/Makefile
  head/math/dieharder/Makefile
  head/math/fflas-ffpack/Makefile
  head/math/giacxcas/Makefile
  head/math/gsl/Makefile
  head/math/gsl/distinfo
  head/math/gsl/pkg-plist
  head/math/labplot/Makefile
  head/math/mandelbulber2/Makefile
  head/math/mathgl/Makefile
  head/math/mcsim/Makefile
  head/math/ocamlgsl/Makefile
  head/math/octave-forge-gsl/Makefile
  head/math/orpie/Makefile
  head/math/p5-Algorithm-KMeans/Makefile
  head/math/p5-Math-GSL/Makefile
  head/math/pspp/Makefile
  head/math/py-cvxopt/Makefile
  head/math/py-pygsl/Makefile
  head/math/py-pygslodeiv2/Makefile
  head/math/rubygem-rb-gsl/Makefile
  head/misc/visp/Makefile
  head/science/afni/Makefile
  head/science/antioch/Makefile
  head/science/coot/Makefile
  head/science/erkale/Makefile
  head/science/fisicalab/Makefile
  head/science/getdp/Makefile
  head/science/gnudatalanguage/Makefile
  head/science/jdftx/Makefile
  head/science/kst2/Makefile
  head/science/meep/Makefile
  head/science/nest/Makefile
  head/science/octopus/Makefile
  head/science/py-mlpy/Makefile
  head/science/scidavis/Makefile
  head/science/step/Makefile
Comment 3 Tobias C. Berner freebsd_committer 2019-10-25 23:42:58 UTC
Thanks for the exp-run.