SUBDIR += orthanc

# Created by: maintainer.freebsd@xpoundit.com

PORTNAME=	orthanc

PORTVERSION=	1.9.3

CATEGORIES=	science

MASTER_SITES=	https://www.orthanc-server.com/downloads/get.php?path=/orthanc/

DISTNAME=	Orthanc-${PORTVERSION}

MAINTAINER=	maintainer.freebsd@xpoundit.com

COMMENT=	Orthanc is a DICOM server for healthcare and medical research

LICENSE=	GPLv3

LICENSE_FILE=	${WRKSRC}/COPYING

LIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \

		libcurl.so:ftp/curl \

		libdcmtkcharls.so:graphics/dcmtk \

		libcivetweb.so:www/civetweb \

		libgtest.so:devel/googletest \

		libicuuc.so:devel/icu \

		libjsoncpp.so:devel/jsoncpp \

		libpng16.so:graphics/png \

		libpugixml.so:textproc/pugixml \

		libtiff.so:graphics/tiff \

		libuuid.so:misc/e2fsprogs-libuuid

USES=		cmake gnome iconv jpeg lua python:build ssl sqlite

WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}

CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer

CMAKE_ARGS=	-DBUILD_CONNECTIVITY_CHECKS=OFF \

		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \

		-DUSE_SYSTEM_BOOST=ON \

		-DUSE_SYSTEM_CIVETWEB=ON \

		-DUSE_SYSTEM_DCMTK=ON \

		-DUSE_SYSTEM_GOOGLE_TEST=ON \

		-DUSE_SYSTEM_JSONCPP=ON \

		-DUSE_SYSTEM_LIBICONV=ON \

		-DUSE_SYSTEM_LIBJPEG=ON \

		-DUSE_SYSTEM_LIBPNG=ON \

		-DUSE_SYSTEM_LUA=ON \

		-DUSE_SYSTEM_PUGIXML=ON \

		-DUSE_SYSTEM_OPENSSL=ON \

		-DUSE_SYSTEM_SQLITE=ON \

		-DUSE_SYSTEM_UUID=ON \

		-DUSE_SYSTEM_ZLIB=ON

USE_GNOME=	libxml2

USE_LDCONFIG=	yes

USE_RC_SUBR=	orthanc

USERS=		orthanc

GROUPS=		orthanc

PLIST_SUB+=	PORTVERSION=${PORTVERSION}

post-install:

	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5

	${MKDIR} ${STAGEDIR}${DATADIR}/plugins

	${MKDIR} ${STAGEDIR}${ETCDIR}

	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json

	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample

.include <bsd.port.mk>

TIMESTAMP = 1620899601

SHA256 (Orthanc-1.9.3.tar.gz) = 41cc35a3d15ecb0d7b834e8e28a740cc4ffa1f333c019a764228d60e96608960

SIZE (Orthanc-1.9.3.tar.gz) = 1818313

#!/bin/sh

# $FreeBSD$

#

# PROVIDE: orthanc

# REQUIRE: LOGIN

# KEYWORD: shutdown

#

# Add these lines to /etc/rc.conf.local or /etc/rc.conf

# to enable this service:

#

# orthanc_enable (bool):	Set to NO by default.

#				Set it to YES to enable Orthanc.

# orthanc_flags (str):		Set to %%ETCDIR%%/orthanc.json

#				by default.

. /etc/rc.subr

name=orthanc

rcvar=orthanc_enable

desc="RESTful DICOM server for healthcare and medical research"

load_rc_config $name

: ${orthanc_enable:=NO}

: ${orthanc_flags="%%ETCDIR%%/orthanc.json"}

start_precmd=orthanc_prestart

pidfile=/var/run/orthanc.pid

procname=%%PREFIX%%/sbin/Orthanc

command=/usr/sbin/daemon

command_args=" -f -p ${pidfile} -u orthanc ${procname} ${orthanc_flags}"

orthanc_prestart()

{

	# Have to empty rc_flags so they don't get passed to daemon(8)

	rc_flags=""

}

run_rc_command "$1"

--- OrthancFramework/Resources/CMake/CivetwebConfiguration.cmake.orig	2021-05-12 13:54:35 UTC

+++ OrthancFramework/Resources/CMake/CivetwebConfiguration.cmake

@@ -98,32 +98,38 @@ else()

   cmake_reset_check_state()

   set(CMAKE_REQUIRED_LIBRARIES dl pthread)

-  CHECK_LIBRARY_EXISTS(civetweb mg_start "" HAVE_CIVETWEB_LIB)

-  if (NOT HAVE_CIVETWEB_LIB)

-    message(FATAL_ERROR "Please install the libcivetweb-dev package")

-  endif()

-  link_libraries(civetweb)

+  find_library(CIVETWEB_LIB NAMES civetweb PATHS

+    /usr/lib

+    /usr/local/lib

+  )

-  # Check whether the system distribution of civetweb contains the

-  # patch "../Patches/civetweb-1.13.patch" that allows to disable

-  # keep-alive on selected HTTP connections. This is useful to speed

-  # up multipart transfers, as encountered in DICOMweb.

-  CHECK_LIBRARY_EXISTS(civetweb mg_disable_keep_alive "" CIVETWEB_HAS_DISABLE_KEEP_ALIVE_1)  # From "../Patches/civetweb-1.13.patch"

-  CHECK_LIBRARY_EXISTS(civetweb mg_disable_connection_keep_alive "" CIVETWEB_HAS_DISABLE_KEEP_ALIVE_2)  # From civetweb >= 1.14

-  if (CIVETWEB_HAS_DISABLE_KEEP_ALIVE_1 OR

-      CIVETWEB_HAS_DISABLE_KEEP_ALIVE_2)

-    add_definitions(

-      -DCIVETWEB_HAS_DISABLE_KEEP_ALIVE=1

-      -DCIVETWEB_HAS_WEBDAV_WRITING=1

-      )

-    message("Performance: Your system-wide distribution of civetweb is configured for best performance")

+  if (CIVETWEB_LIB)

+    CHECK_LIBRARY_EXISTS(${CIVETWEB_LIB} mg_start "" HAVE_CIVETWEB_LIB)

+    if (NOT HAVE_CIVETWEB_LIB)

+      message(FATAL_ERROR "Unable to use mg_start from civetweb library")

+    endif()

+

+    CHECK_LIBRARY_EXISTS(${CIVETWEB_LIB} mg_disable_keep_alive "" CIVETWEB_HAS_DISABLE_KEEP_ALIVE)

+    if (CIVETWEB_HAS_DISABLE_KEEP_ALIVE)

+      add_definitions(

+        -DCIVETWEB_HAS_DISABLE_KEEP_ALIVE=1

+        -DCIVETWEB_HAS_WEBDAV_WRITING=1

+        )

+      message("Performance: Your system-wide distribution of civetweb is configured for best performance")

+    else()

+      message(WARNING "Performance: Your system-wide distribution of civetweb does not feature the mg_disable_keep_alive() function, and WebDAV will only be available for read-only access")

+      add_definitions(

+        -DCIVETWEB_HAS_DISABLE_KEEP_ALIVE=0

+        -DCIVETWEB_HAS_WEBDAV_WRITING=0

+        )

+    endif()

+

+    get_filename_component(CIVETWEB_LIB_PATH ${CIVETWEB_LIB} DIRECTORY)

+    link_directories(${CIVETWEB_LIB_PATH})

+    link_libraries(civetweb)

   else()

-    message(WARNING "Performance: Your system-wide distribution of civetweb does not feature the mg_disable_keep_alive() function, and WebDAV will only be available for read-only access")

-    add_definitions(

-      -DCIVETWEB_HAS_DISABLE_KEEP_ALIVE=0

-      -DCIVETWEB_HAS_WEBDAV_WRITING=0

-      )

+    message(FATAL_ERROR "Unable to find the civetweb library")

   endif()

   unset(CMAKE_REQUIRED_LIBRARIES)  # This reset must be after "CHECK_LIBRARY_EXISTS"

--- OrthancServer/Resources/Configuration.json.orig	2021-01-29 09:36:16 UTC

+++ OrthancServer/Resources/Configuration.json

@@ -10,12 +10,12 @@

   // Path to the directory that holds the heavyweight files (i.e. the

   // raw DICOM instances). Backslashes must be either escaped by

   // doubling them, or replaced by forward slashes "/".

-  "StorageDirectory" : "OrthancStorage",

+  "StorageDirectory" : "/var/db/orthanc/db-v5",

   // Path to the directory that holds the SQLite index (if unset, the

   // value of StorageDirectory is used). This index could be stored on

   // a RAM-drive or a SSD device for performance reasons.

-  "IndexDirectory" : "OrthancStorage",

+  "IndexDirectory" : "/var/db/orthanc/db-v5",

   // Path to the directory where Orthanc stores its large temporary

   // files. The content of this folder can be safely deleted once

@@ -53,6 +53,7 @@

   // find shared libraries. Backslashes must be either escaped by

   // doubling them, or replaced by forward slashes "/".

   "Plugins" : [

+    "%%PREFIX%%/share/orthanc/plugins/"

   ],

   // Maximum number of processing jobs that are simultaneously running

Orthanc aims at providing a simple, yet powerful standalone DICOM server. It

is designed to improve the DICOM flows in hospitals and to support research

about the automated analysis of medical images. Orthanc lets its users focus

on the content of the DICOM files, hiding the complexity of the DICOM format

and of the DICOM protocol.

Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a

DICOM store (in other words, a mini-PACS system). Its architecture is

lightweight and standalone, meaning that no complex database administration

is required, nor the installation of third-party dependencies.

What makes Orthanc unique is the fact that it provides a RESTful API. Thanks

to this major feature, it is possible to drive Orthanc from any computer

language. The DICOM tags of the stored medical images can be downloaded in

the JSON file format. Furthermore, standard PNG images can be generated

on-the-fly from the DICOM instances by Orthanc.

Orthanc also features a plugin mechanism to add new modules that extends the

core capabilities of its REST API. A Web viewer, a PostgreSQL database

back-end, a MySQL database back-end, and a reference implementation of

DICOMweb are currently freely available as plugins.

WWW: https://www.orthanc-server.com/

@owner orthanc

@group orthanc

@mode 700

@dir %%DATADIR%%/plugins

@dir /var/db/orthanc/db/db-v5

@dir /var/db/orthanc/db

@dir /var/db/orthanc

@mode 600

@sample %%ETCDIR%%/orthanc.json.sample

@mode

bin/OrthancRecoverCompressedFile

include/orthanc/OrthancCDatabasePlugin.h

include/orthanc/OrthancCPlugin.h

sbin/Orthanc

%%DATADIR%%/plugins/libModalityWorklists.so

%%DATADIR%%/plugins/libModalityWorklists.so.%%PORTVERSION%%

%%DATADIR%%/plugins/libServeFolders.so

%%DATADIR%%/plugins/libServeFolders.so.%%PORTVERSION%%