Attachment #59956 for bug #90140




#

PORTNAME=	seaview
PORTVERSION=	2005.12.07
CATEGORIES=	biology
MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
DISTNAME=	${PORTNAME}

ALL_TARGET=	${PORTNAME}

CFLAGS+=	-D HAVE_DIRENT_H \
		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help

do-install:
	@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
	@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
	@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}

.include <bsd.port.mk>

Lines 1-3 Link Here

(-)seaview/distinfo (-3 / +3 lines)
1	MD5 (seaview-2005.13.07/seaview.tar) = 0971b3485351f6a1f56a7b56ead2359c	1	MD5 (seaview-2005.12.07/seaview.tar) = 4d1d1406f5d9ae0a0edad7144742143b
2	SHA256 (seaview-2005.13.07/seaview.tar) = 7f48c494e5bee5dacef28bab2a52eab8aff6b66ceff8fab47fe77a18de376fc5	2	SHA256 (seaview-2005.12.07/seaview.tar) = ced1844ca3fc8181a9c811079dbc8e2ee67242ef49be113f761abad034ba8ba3
3	SIZE (seaview-2005.13.07/seaview.tar) = 595968	3	SIZE (seaview-2005.12.07/seaview.tar) = 595968

Lines 1-5 Link Here

(-)seaview/files/patch-Makefile (-2 / +2 lines)
1	--- Makefile.orig Wed Apr 6 05:54:30 2005	1	--- Makefile.orig Wed Apr 6 05:54:30 2005
2	+++ Makefile Mon Dec 5 08:31:05 2005	2	+++ Makefile Fri Dec 9 07:41:26 2005
3	@@ -1,18 +1,15 @@	3	@@ -1,18 +1,15 @@
4	-FLTK = ../fltk	4	-FLTK = ../fltk
5	-PDF = ../PDFlib-Lite-6.0.1/libs/pdflib	5	-PDF = ../PDFlib-Lite-6.0.1/libs/pdflib
Lines 7-13 Link Here
7	CXX = g++	7	CXX = g++
8		8
9	-CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include	9	-CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include
10	+CFLAGS = -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include	10	+CFLAGS+= -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
11		11
12		12
13	OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o	13	OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o




--- align.cxx.orig	Mon Nov 17 14:15:01 2003
+++ align.cxx	Mon Nov 17 14:15:26 2003
@@ -1,6 +1,7 @@
 #include "seaview.h"
 #include <stdlib.h>
 #include <ctype.h>
+#include <unistd.h>
 #ifndef WIN32
 #include <FL/x.H>
 #endif
@@ -155,7 +156,7 @@
 #endif
 debut = view->active_region->list->debut;
 fin = view->active_region->list->fin;
-tmpnam(base_fname);
+mkstemp(base_fname);
 /* 
 convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
 */

Lines 1-11 Link Here

(-)seaview/files/patch-seaview.cxx (-11 lines)
1	--- seaview.cxx.orig Mon Nov 17 14:16:39 2003
2	+++ seaview.cxx Mon Nov 17 14:17:13 2003
3	@@ -164,6 +164,8 @@
4	"seaview.hlp",
5	#elif defined(__APPLE__)
6	NULL,
7	+#elif defined(DEFAULT_HELPFILE)
8	+ __XSTRING(DEFAULT_HELPFILE),
9	#else
10	"seaview.help",
11	#endif

Return to bug 90140

Lines 7-13 Link Here

(-)seaview/Makefile (-4 / +4 lines)
7	#	7	#
8		8
9	PORTNAME= seaview	9	PORTNAME= seaview
10	PORTVERSION= 2005.13.07	10	PORTVERSION= 2005.12.07
11	CATEGORIES= biology	11	CATEGORIES= biology
12	MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/	12	MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
13	DISTNAME= ${PORTNAME}	13	DISTNAME= ${PORTNAME}
Lines 27-38 Link Here
27	ALL_TARGET= ${PORTNAME}	27	ALL_TARGET= ${PORTNAME}
28		28
29	CFLAGS+= -D HAVE_DIRENT_H \	29	CFLAGS+= -D HAVE_DIRENT_H \
30	-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/seaview/seaview.help	30	-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
31		31
32	do-install:	32	do-install:
33	@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin	33	@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
34	@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin	34	@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
35	@${MKDIR} ${PREFIX}/lib/X11/seaview	35	@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
36	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview	36	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
37		37
38	.include <bsd.port.mk>	38	.include <bsd.port.mk>

Lines 1-19 Link Here

(-)seaview/files/patch-align.cxx (-19 lines)
1	--- align.cxx.orig Mon Nov 17 14:15:01 2003
2	+++ align.cxx Mon Nov 17 14:15:26 2003
3	@@ -1,6 +1,7 @@
4	#include "seaview.h"
5	#include <stdlib.h>
6	#include <ctype.h>
7	+#include <unistd.h>
8	#ifndef WIN32
9	#include <FL/x.H>
10	#endif
11	@@ -155,7 +156,7 @@
12	#endif
13	debut = view->active_region->list->debut;
14	fin = view->active_region->list->fin;
15	-tmpnam(base_fname);
16	+mkstemp(base_fname);
17	/*
18	convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
19	*/