Attachment 144095 Details for Bug 191336 – svn diff for biology/phred

[patch] svn diff for biology/phred

phred.diff (text/plain), 3.30 KB, created by Motomichi Matsuzaki on 2014-06-24 11:22:01 UTC

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Creator: Motomichi Matsuzaki

Created: 2014-06-24 11:22:01 UTC

Size: 3.30 KB

patch

obsolete

>Index: Makefile
>===================================================================
>--- Makefile	(revision 359067)
>+++ Makefile	(working copy)
>@@ -11,6 +11,8 @@
> MAINTAINER=	mzaki@m.u-tokyo.ac.jp
> COMMENT=	Base calling and quality value assignment on DNA sequencing
> 
>+SUB_FILES=	pkg-message
>+
> RESTRICTED=	Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
> .if defined(PACKAGE_BUILDING)
> IGNORE=		distribution files must be obtained via the authors
>@@ -20,21 +22,13 @@
> 
> ALL_TARGET=	phred daev
> 
>-BINMODE=	0111	# avoid copying binaries as required by the agreement
> BINARIES=	phred daev
>-.for f in ${BINARIES}
>-PLIST_FILES+=	bin/${f}
>-.endfor
> 
> DATADIR=	${PREFIX}/etc/PhredPar
> DATAFILES=	phredpar.dat
>-.for f in ${DATAFILES}
>-PORTDATA+=	${f}.dist
>-.endfor
> 
> PORTDOCS=	NEWS PHRED.DOC DAEV.DOC
> 
>-NO_STAGE=	yes
> .include <bsd.port.pre.mk>
> 
> .for f in ${DISTFILES}
>@@ -45,23 +39,15 @@
> 
> do-install:
> .for f in ${BINARIES}
>-	@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/
>+	@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/
> .endfor
>-	@${MKDIR} ${DATADIR}
>+	@${MKDIR} ${STAGEDIR}${DATADIR}
> .for f in ${DATAFILES}
>-	@${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}/${f}.dist
>+	@${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DATADIR}/${f}.sample
> .endfor
>-.if ${PORT_OPTIONS:MDOCS}
>-	@${MKDIR} ${DOCSDIR}
>+	@${MKDIR} ${STAGEDIR}${DOCSDIR}
> .for f in ${PORTDOCS}
>-	@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}
>+	@${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DOCSDIR}
> .endfor
>-.endif
>-	@${ECHO} "---------------------------------------------------------------------------"
>-	@${ECHO} "You must set PHRED_PARAMETER_FILE environment variable."
>-	@${ECHO} ""
>-	@${ECHO} "The default parameter file in the distribution is located at:"
>-	@${ECHO} "  ${DATADIR}/phredpar.dat.dist"
>-	@${ECHO} "---------------------------------------------------------------------------"
> 
> .include <bsd.port.post.mk>
>Index: files/pkg-message.in
>===================================================================
>--- files/pkg-message.in	(revision 0)
>+++ files/pkg-message.in	(working copy)
>@@ -0,0 +1,6 @@
>+-----------------------------------------------------------------------------
>+You must set PHRED_PARAMETER_FILE environment variable.
>+
>+The default parameter file in the distribution is located at:
>+%%DATADIR%%/phredpar.dat
>+-----------------------------------------------------------------------------
>
>Property changes on: files/pkg-message.in
>___________________________________________________________________
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Index: pkg-plist
>===================================================================
>--- pkg-plist	(revision 0)
>+++ pkg-plist	(working copy)
>@@ -0,0 +1,6 @@
>+@mode 111
>+bin/daev
>+bin/phred
>+@mode
>+@sample %%DATADIR%%/phredpar.dat.sample
>+@dirrmtry %%DATADIR%%
>
>Property changes on: pkg-plist
>___________________________________________________________________
>Added: svn:mime-type
>## -0,0 +1 ##
>+text/plain
>\ No newline at end of property
>Added: fbsd:nokeywords
>## -0,0 +1 ##
>+yes
>\ No newline at end of property
>Added: svn:eol-style
>## -0,0 +1 ##
>+native
>\ No newline at end of property

Flags:

mzaki: maintainer-approval+

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Attachments on bug 191336: 144093 | 144094 | 144095