Attachment 217125 Details for Bug 242546 – Diff / the latest version of science/ortanc (orthanc-1.7.2_1, diff based on r471825)

[patch] Diff / the latest version of science/ortanc (orthanc-1.7.2_1, diff based on r471825)

orthanc.r471825.diff (text/plain), 9.87 KB, created by Frank Scholl on 2020-08-10 09:34:46 UTC

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Creator: Frank Scholl

Created: 2020-08-10 09:34:46 UTC

Size: 9.87 KB

patch

obsolete

>Index: science/orthanc/Makefile
>===================================================================
>--- science/orthanc/Makefile	(revision 471825)
>+++ science/orthanc/Makefile	(working copy)
>@@ -1,92 +1,71 @@
>-# Created by: mp39590@gmail.com
>+# Created by: maintainer.freebsd@xpoundit.com
> # $FreeBSD$
> 
> PORTNAME=	orthanc
>-PORTVERSION=	1.3.0
>-PORTREVISION=	4
>-CATEGORIES=	science graphics net www
>+PORTVERSION=	1.7.2
>+CATEGORIES=	science
> MASTER_SITES=	http://orthanc-server.com/downloads/get.php?path=/orthanc/:main \
>-		http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/:mongoose
>+		http://orthanc.osimis.io/ThirdPartyDownloads/:thirdparty
> DISTFILES=	Orthanc-${PORTVERSION}.tar.gz:main \
>-		mongoose-3.8.tgz:mongoose
>+		civetweb-1.12-fixed.tar.gz:thirdparty \
>+		e2fsprogs-1.44.5.tar.gz:thirdparty
> DIST_SUBDIR=	${PORTNAME}
>+EXTRACT_ONLY=	Orthanc-${PORTVERSION}.tar.gz
> 
>-MAINTAINER=	mp39590@gmail.com
>-COMMENT=	RESTful DICOM server for healthcare and medical research
>+MAINTAINER=	maintainer.freebsd@xpoundit.com
>+COMMENT=	Orthanc is a DICOM server for healthcare and medical research
> 
>-# GPLv3 license, with the OpenSSL exception.
> LICENSE=	GPLv3
> LICENSE_FILE=	${WRKSRC}/COPYING
> 
>-BROKEN=		fails to build with boost 1.66, see bug 224177
>-BROKEN_powerpc64=	fails to configure: CMake: Looking for C++ include pugixml.hpp - not found
>-DEPRECATED=	Broken for more than 3 months
>-EXPIRATION_DATE=	2018-06-06
>-
>-LIB_DEPENDS=	libcurl.so:ftp/curl \
>+LIB_DEPENDS=	libboost_atomic.so:devel/boost-libs \
>+		libcharls.so:graphics/dcmtk \
>+		libcurl.so:ftp/curl \
>+		libgtest.so:devel/googletest \
>+		libicudata.so:devel/icu \
>+		libjbig.so:graphics/jbigkit \
>+		libjpeg.so:graphics/jpeg-turbo \
> 		libjsoncpp.so:devel/jsoncpp \
>+		libnghttp2.so:www/libnghttp2 \
>+		libpng16.so:graphics/png \
>+		libpugixml.so:textproc/pugixml \
>+		libsqlite3.so:databases/sqlite3 \
>+		libtiff.so:graphics/tiff \
> 		libuuid.so:misc/e2fsprogs-libuuid \
>-		libboost_filesystem.so:devel/boost-libs \
>-		libboost_thread.so:devel/boost-libs \
>-		libboost_system.so:devel/boost-libs \
>-		libboost_date_time.so:devel/boost-libs \
>-		libboost_regex.so:devel/boost-libs \
>-		libboost_locale.so:devel/boost-libs \
>-		libdcmdsig.so:devel/dcmtk \
>-		libcharls.so:devel/dcmtk \
>-		libdcmjpls.so:devel/dcmtk \
>-		libsqlite3.so:databases/sqlite3 \
>-		libpng.so:graphics/png \
>-		libgtest.so:devel/googletest \
>-		libpugixml.so:textproc/pugixml
>+		libxml2.so:textproc/libxml2
> 
>+USES=		cmake dos2unix iconv jpeg lua python:build ssl
>+
>+WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
>+CMAKE_SOURCE_PATH= ${WRKSRC}/OrthancServer
> CMAKE_ARGS=	-DDCMTK_LIBRARIES="dcmdsig;charls;dcmjpls" \
> 		-DDCMTK_DIR="${LOCALBASE}" \
> 		-DDCMTK_DICTIONARY_DIR="${LOCALBASE}/share/dcmtk" \
>-		-DUSE_SYSTEM_MONGOOSE=OFF \
>-		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF
>-
>-USES=		cmake:outsource dos2unix jpeg lua:51 python:build ssl
>-CFLAGS+=	-I${LOCALBASE}/include
>+		-DUSE_SYSTEM_CIVETWEB=OFF \
>+		-DUSE_SYSTEM_UUID=OFF \
>+		-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF \
>+		-DBUILD_CONNECTIVITY_CHECKS=OFF
>+CFLAGS+=	-I${LOCALBASE}/include \
>+		-DNDEBUG
>+CXXFLAGS+=	-DNDEBUG
> DOS2UNIX_FILES=	CMakeLists.txt
> USE_LDCONFIG=	yes
> USE_RC_SUBR=	orthanc
>-WRKSRC=		${WRKDIR}/Orthanc-${PORTVERSION}
> USERS=		orthanc
> GROUPS=		orthanc
> PLIST_SUB+=	PORTVERSION=${PORTVERSION}
> 
>-# This is mongoose sources, downloaded from Orthanc author homepage.  Orthanc
>-# requires mongoose webserver, but after version 3.8, mongoose developers has
>-# changed the license from MIT to GPLv2 only. This action made illegal to
>-# combine new mongoose versions with GPLv3 only Orthanc.
>-# We download sources manually and pass USE_SYSTEM_MONGOOSE=OFF to Orthanc
>-# cmake variables to tell that mongoose is not presented on the host OS and
>-# should be build together with the software instead.
>-# https://www.mail-archive.com/mongoose-users@googlegroups.com/msg00625.html
> post-patch:
>-	${MKDIR} ${WRKSRC}/ThirdPartyDownloads
>-	${CP} ${DISTDIR}/${DIST_SUBDIR}/mongoose-3.8.tgz ${WRKSRC}/ThirdPartyDownloads
>-	# Orthanc hardcodes /usr/local paths for libs and includes.
>-	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Resources/CMake/*.cmake
>+	${MKDIR} ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
>+	${MKDIR} ${CMAKE_SOURCE_PATH}/Plugins/Samples/ConnectivityChecks/ThirdPartyDownloads
>+	${CP} ${DISTDIR}/${DIST_SUBDIR}/civetweb-1.12-fixed.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
>+	${CP} ${DISTDIR}/${DIST_SUBDIR}/e2fsprogs-1.44.5.tar.gz ${CMAKE_SOURCE_PATH}/ThirdPartyDownloads
> 
>-# There is no way to disable building of test units without a patch, on other
>-# hand it brings only one build dependency (devel/googletest) and running it was
>-# helpful in early bug detection in Debian.
>-# Some tests require connections to be made to the outside world, this is
>-# definitely unsupported behaviour and therefor those tests are disabled with
>-# cmake variable above (-DUNIT_TESTS_WITH_HTTP_CONNEXIONS=OFF).
>-#
>-# Tests run is temporary disabled: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=215393
>-#post-build:
>-#	@cd ${BUILD_WRKSRC} && ./UnitTests
>-
> post-install:
> 	${MKDIR} ${STAGEDIR}/var/db/orthanc/db/db-v5
> 	${MKDIR} ${STAGEDIR}${DATADIR}/plugins
> 	${MKDIR} ${STAGEDIR}${ETCDIR}
>-	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/Resources/Configuration.json
>-	${CP} ${WRKSRC}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
>-	${STRIP_CMD} ${STAGEDIR}${DATADIR}/plugins/libServeFolders.so.${PORTVERSION}
>+	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${CMAKE_SOURCE_PATH}/Resources/Configuration.json
>+	${CP} ${CMAKE_SOURCE_PATH}/Resources/Configuration.json ${STAGEDIR}${ETCDIR}/orthanc.json.sample
> 
> .include <bsd.port.mk>
>Index: science/orthanc/distinfo
>===================================================================
>--- science/orthanc/distinfo	(revision 471825)
>+++ science/orthanc/distinfo	(working copy)
>@@ -1,5 +1,7 @@
>-TIMESTAMP = 1508149082
>-SHA256 (orthanc/Orthanc-1.3.0.tar.gz) = a68b3c3fda8ea5cd065d356b314737634d8088d6ab2380c9ccfa433cc8fe61de
>-SIZE (orthanc/Orthanc-1.3.0.tar.gz) = 1231636
>-SHA256 (orthanc/mongoose-3.8.tgz) = 6afc2c377614a01a24b78560a62d1316b29372afe08eae3715b56c877be71c6e
>-SIZE (orthanc/mongoose-3.8.tgz) = 1577314
>+TIMESTAMP = 1596543829
>+SHA256 (orthanc/Orthanc-1.7.2.tar.gz) = ea167b4688db7cd8855a1758f289b21d490e7d97afcc405f12d881b22bf17e9b
>+SIZE (orthanc/Orthanc-1.7.2.tar.gz) = 1644200
>+SHA256 (orthanc/civetweb-1.12-fixed.tar.gz) = 0e81fc252166302a33abd68e98936fb24d9b008b5816fe50edd6b12256768e41
>+SIZE (orthanc/civetweb-1.12-fixed.tar.gz) = 3035855
>+SHA256 (orthanc/e2fsprogs-1.44.5.tar.gz) = 2e211fae27ef74d5af4a4e40b10b8df7f87c655933bd171aab4889bfc4e6d1cc
>+SIZE (orthanc/e2fsprogs-1.44.5.tar.gz) = 7619237
>Index: science/orthanc/pkg-descr
>===================================================================
>--- science/orthanc/pkg-descr	(revision 471825)
>+++ science/orthanc/pkg-descr	(working copy)
>@@ -1,20 +1,23 @@
>-Orthanc aims at providing a simple, yet powerful standalone DICOM
>-server. It is designed to improve the DICOM flows in hospitals and to
>-support research about the automated analysis of medical images.
>+Orthanc aims at providing a simple, yet powerful standalone DICOM server. It
>+is designed to improve the DICOM flows in hospitals and to support research
>+about the automated analysis of medical images. Orthanc lets its users focus
>+on the content of the DICOM files, hiding the complexity of the DICOM format
>+and of the DICOM protocol.
> 
>-Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X
>-into a DICOM store (in other words, a mini-PACS system). Its
>-architecture is lightweight and standalone, meaning that no complex
>-database administration is required, nor the installation of third-party
>-dependencies.
>+Orthanc can turn any computer running Windows, Linux, FreeBSD or OS X into a
>+DICOM store (in other words, a mini-PACS system). Its architecture is
>+lightweight and standalone, meaning that no complex database administration
>+is required, nor the installation of third-party dependencies.
> 
>-What makes Orthanc unique is the fact that it provides a RESTful API.
>-Thanks to this major feature, it is possible to drive Orthanc from any
>-computer language. The DICOM tags of the stored medical images can be
>-downloaded in the JSON file format. Furthermore, standard PNG images can
>-be generated on-the-fly from the DICOM instances by Orthanc.
>+What makes Orthanc unique is the fact that it provides a RESTful API. Thanks
>+to this major feature, it is possible to drive Orthanc from any computer
>+language. The DICOM tags of the stored medical images can be downloaded in
>+the JSON file format. Furthermore, standard PNG images can be generated
>+on-the-fly from the DICOM instances by Orthanc.
> 
>-Orthanc lets its users focus on the content of the DICOM files, hiding
>-the complexity of the DICOM format and of the DICOM protocol.
>+Orthanc also features a plugin mechanism to add new modules that extends the
>+core capabilities of its REST API. A Web viewer, a PostgreSQL database
>+back-end, a MySQL database back-end, and a reference implementation of
>+DICOMweb are currently freely available as plugins.
> 
>-WWW: http://www.orthanc-server.com/
>+WWW: https://www.orthanc-server.com/
>Index: science/orthanc/pkg-plist
>===================================================================
>--- science/orthanc/pkg-plist	(revision 471825)
>+++ science/orthanc/pkg-plist	(working copy)
>@@ -10,10 +10,9 @@
> @mode
> include/orthanc/OrthancCDatabasePlugin.h
> include/orthanc/OrthancCPlugin.h
>-include/orthanc/OrthancCppDatabasePlugin.h
>-%%DATADIR%%/plugins/libServeFolders.so
>-%%DATADIR%%/plugins/libServeFolders.so.%%PORTVERSION%%
>-%%DATADIR%%/plugins/libModalityWorklists.so
>-%%DATADIR%%/plugins/libModalityWorklists.so.%%PORTVERSION%%
> bin/OrthancRecoverCompressedFile
> sbin/Orthanc
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ModalityWorklists.so.%%PORTVERSION%%
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so
>+%%DATADIR%%/plugins/%%LUA_LIBDIR%%ServeFolders.so.%%PORTVERSION%%

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Attachments on bug 242546: 209831 | 214830 | 215799 | 215907 | 217005 | 217069 | 217125 | 217126 | 217732 | 225062 | 225335 | 225590 | 225634