Attachment 59956 Details for Bug 90140 – seaview.diff

[patch] seaview.diff

seaview.diff (text/plain), 3.63 KB, created by Fernan Aguero on 2005-12-09 14:10:02 UTC

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Creator: Fernan Aguero

Created: 2005-12-09 14:10:02 UTC

Size: 3.63 KB

patch

obsolete

>diff -ruN /usr/ports/biology/seaview/Makefile seaview/Makefile
>--- /usr/ports/biology/seaview/Makefile	Tue Dec  6 14:44:00 2005
>+++ seaview/Makefile	Fri Dec  9 07:46:41 2005
>@@ -7,7 +7,7 @@
> #
> 
> PORTNAME=	seaview
>-PORTVERSION=	2005.13.07
>+PORTVERSION=	2005.12.07
> CATEGORIES=	biology
> MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
> DISTNAME=	${PORTNAME}
>@@ -27,12 +27,12 @@
> ALL_TARGET=	${PORTNAME}
> 
> CFLAGS+=	-D HAVE_DIRENT_H \
>-		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/seaview/seaview.help
>+		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
> 
> do-install:
> 	@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
> 	@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
>-	@${MKDIR} ${PREFIX}/lib/X11/seaview
>-	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
>+	@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
>+	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
> 
> .include <bsd.port.mk>
>diff -ruN /usr/ports/biology/seaview/distinfo seaview/distinfo
>--- /usr/ports/biology/seaview/distinfo	Tue Dec  6 14:44:00 2005
>+++ seaview/distinfo	Wed Dec  7 12:08:24 2005
>@@ -1,3 +1,3 @@
>-MD5 (seaview-2005.13.07/seaview.tar) = 0971b3485351f6a1f56a7b56ead2359c
>-SHA256 (seaview-2005.13.07/seaview.tar) = 7f48c494e5bee5dacef28bab2a52eab8aff6b66ceff8fab47fe77a18de376fc5
>-SIZE (seaview-2005.13.07/seaview.tar) = 595968
>+MD5 (seaview-2005.12.07/seaview.tar) = 4d1d1406f5d9ae0a0edad7144742143b
>+SHA256 (seaview-2005.12.07/seaview.tar) = ced1844ca3fc8181a9c811079dbc8e2ee67242ef49be113f761abad034ba8ba3
>+SIZE (seaview-2005.12.07/seaview.tar) = 595968
>diff -ruN /usr/ports/biology/seaview/files/patch-Makefile seaview/files/patch-Makefile
>--- /usr/ports/biology/seaview/files/patch-Makefile	Tue Dec  6 12:13:17 2005
>+++ seaview/files/patch-Makefile	Fri Dec  9 07:41:35 2005
>@@ -1,5 +1,5 @@
> --- Makefile.orig	Wed Apr  6 05:54:30 2005
>-+++ Makefile	Mon Dec  5 08:31:05 2005
>++++ Makefile	Fri Dec  9 07:41:26 2005
> @@ -1,18 +1,15 @@
> -FLTK = ../fltk
> -PDF = ../PDFlib-Lite-6.0.1/libs/pdflib
>@@ -7,7 +7,7 @@
>  CXX = g++
>  
> -CFLAGS  = -Dunix  -U__APPLE__  -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include 
>-+CFLAGS  = -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
>++CFLAGS+= -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
>  
>  
>  OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o
>diff -ruN /usr/ports/biology/seaview/files/patch-align.cxx seaview/files/patch-align.cxx
>--- /usr/ports/biology/seaview/files/patch-align.cxx	Sat Nov 22 01:05:03 2003
>+++ seaview/files/patch-align.cxx	Wed Dec 31 21:00:00 1969
>@@ -1,19 +0,0 @@
>---- align.cxx.orig	Mon Nov 17 14:15:01 2003
>-+++ align.cxx	Mon Nov 17 14:15:26 2003
>-@@ -1,6 +1,7 @@
>- #include "seaview.h"
>- #include <stdlib.h>
>- #include <ctype.h>
>-+#include <unistd.h>
>- #ifndef WIN32
>- #include <FL/x.H>
>- #endif
>-@@ -155,7 +156,7 @@
>- #endif
>- debut = view->active_region->list->debut;
>- fin = view->active_region->list->fin;
>--tmpnam(base_fname);
>-+mkstemp(base_fname);
>- /* 
>- convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
>- */
>diff -ruN /usr/ports/biology/seaview/files/patch-seaview.cxx seaview/files/patch-seaview.cxx
>--- /usr/ports/biology/seaview/files/patch-seaview.cxx	Sat Nov 22 01:05:03 2003
>+++ seaview/files/patch-seaview.cxx	Wed Dec 31 21:00:00 1969
>@@ -1,11 +0,0 @@
>---- seaview.cxx.orig	Mon Nov 17 14:16:39 2003
>-+++ seaview.cxx	Mon Nov 17 14:17:13 2003
>-@@ -164,6 +164,8 @@
>- 	"seaview.hlp", 
>- #elif defined(__APPLE__)
>- 	NULL,
>-+#elif defined(DEFAULT_HELPFILE)
>-+       __XSTRING(DEFAULT_HELPFILE),
>- #else
>- 	"seaview.help", 
>- #endif

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Attachments on bug 90140: 59956 | 59957 | 59958 | 59959