Attachment 71113 Details for Bug 103651 – file.shar

file.shar

file.shar (text/plain), 2.96 KB, created by Bob Zimmermann on 2006-09-25 23:00:34 UTC

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Creator: Bob Zimmermann

Created: 2006-09-25 23:00:34 UTC

Size: 2.96 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	gmap
>#	gmap/files
>#	gmap/files/patch-configure
>#	gmap/Makefile
>#	gmap/pkg-descr
>#	gmap/distinfo
>#	gmap/pkg-plist
>#
>echo c - gmap
>mkdir -p gmap > /dev/null 2>&1
>echo c - gmap/files
>mkdir -p gmap/files > /dev/null 2>&1
>echo x - gmap/files/patch-configure
>sed 's/^X//' >gmap/files/patch-configure << 'END-of-gmap/files/patch-configure'
>X--- configure.orig	Mon Sep 25 21:06:11 2006
>X+++ configure	Mon Sep 25 21:05:13 2006
>X@@ -3365,7 +3365,7 @@
>X else
>X   answer=""
>X fi;
>X-if test x"$answer" == x; then
>X+if test x"$answer" = x; then
>X 
>X   EXP_VAR=GMAPDB
>X   FROM_VAR='${prefix}/share'
>END-of-gmap/files/patch-configure
>echo x - gmap/Makefile
>sed 's/^X//' >gmap/Makefile << 'END-of-gmap/Makefile'
>X# Ports collection makefile for:   gmap
>X# Date created:        24 September 2006
>X# Whom:                rpz
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=     gmap
>XPORTVERSION=  2006.04.21
>XDISTNAME=     ${PORTNAME}-`${ECHO} ${PORTVERSION} | ${SED} s/\\\./-/g`
>XCATEGORIES=   biology
>XMASTER_SITES= http://www.gene.com/share/gmap/src/
>X
>XMAINTAINER=   rpz@cse.wustl.edu
>XCOMMENT=      A Genomic Mapping and Alignment Program for mRNA and EST Sequences
>X
>XFETCH_DEPENDS=	wget:${PORTSDIR}/ftp/wget
>X
>XFETCH_CMD=	${LOCALBASE}/bin/wget -c
>X
>XUSE_GMAKE=     yes
>XGNU_CONFIGURE= yes
>XCONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
>X
>X.include <bsd.port.mk>
>END-of-gmap/Makefile
>echo x - gmap/pkg-descr
>sed 's/^X//' >gmap/pkg-descr << 'END-of-gmap/pkg-descr'
>XA standalone program for mapping and aligning cDNA sequences to a
>Xgenome. The program maps and aligns a single sequence with minimal
>Xstartup time and memory requirements, and provides fast batch
>Xprocessing of large sequence sets. The program generates accurate
>Xgene structures, even in the presence of substantial polymorphisms
>Xand sequence errors, without using probabilistic splice site models.
>XMethodology underlying the program includes a minimal sampling
>Xstrategy for genomic mapping, oligomer chaining for approximate
>Xalignment, sandwich DP for splice site detection, and microexon
>Xidentification with statistical significance testing.
>X
>XWWW: http://www.gene.com/share/gmap
>END-of-gmap/pkg-descr
>echo x - gmap/distinfo
>sed 's/^X//' >gmap/distinfo << 'END-of-gmap/distinfo'
>XMD5 (gmap-2006-04-21.tar.gz) = 197a47e30dac77c93d3f1b99ec805217
>XSHA256 (gmap-2006-04-21.tar.gz) = e635884c07d57e9a79e6e6744587dc1459dd0895eb40d6ca4b61f9827e332984
>XSIZE (gmap-2006-04-21.tar.gz) = 1282409
>END-of-gmap/distinfo
>echo x - gmap/pkg-plist
>sed 's/^X//' >gmap/pkg-plist << 'END-of-gmap/pkg-plist'
>Xbin/gmap
>Xbin/get-genome
>Xbin/gmapindex
>Xbin/iit_store
>Xbin/iit_get
>Xbin/iit_dump
>Xbin/gmap_compress
>Xbin/gmap_uncompress
>Xbin/gmap_process
>Xbin/gmap_setup
>Xbin/md_coords
>Xbin/fa_coords
>END-of-gmap/pkg-plist
>exit

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Attachments on bug 103651: 71113