Attachment 161314 Details for Bug 203295 – SHAR archive

SHAR archive

fasttree-shar.txt (text/plain), 1.93 KB, created by Jason W. Bacon on 2015-09-23 20:02:10 UTC

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Creator: Jason W. Bacon

Created: 2015-09-23 20:02:10 UTC

Size: 1.93 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	fasttree
>#	fasttree/Makefile
>#	fasttree/distinfo
>#	fasttree/pkg-descr
>#
>echo c - fasttree
>mkdir -p fasttree > /dev/null 2>&1
>echo x - fasttree/Makefile
>sed 's/^X//' >fasttree/Makefile << 'cb668c87a901fa17b4401704857e8908'
>X# Created by: Jason Bacon <jwbacon@tds.net>
>X# $FreeBSD$
>X
>XPORTNAME=	FastTree
>XPORTVERSION=	2.1.8
>XCATEGORIES=	biology
>XMASTER_SITES=	http://www.microbesonline.org/fasttree/
>XEXTRACT_SUFX=	.c
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Approximately-maximum-likelihood phylogenetic trees from alignments
>X
>X# LICENSE=	unspecified open source
>X
>XUSES=		compiler:openmp
>X
>XCFLAGS+=	-DOPENMP -fopenmp -O3 -finline-functions -funroll-loops
>XLDFLAGS+=	-lm
>X
>XPLIST_FILES=	bin/FastTree
>X
>Xdo-extract:
>X	${MKDIR} ${WRKSRC}
>X	${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}
>X
>Xdo-build:
>X	cd ${WRKSRC} && ${CC} ${CFLAGS} -o FastTree ${DISTFILES} ${LDFLAGS}
>X
>Xdo-install:
>X	${MKDIR} ${STAGEDIR}${PREFIX}/bin
>X	${INSTALL_PROGRAM} ${WRKSRC}/FastTree ${STAGEDIR}${PREFIX}/bin
>X
>X.include <bsd.port.mk>
>cb668c87a901fa17b4401704857e8908
>echo x - fasttree/distinfo
>sed 's/^X//' >fasttree/distinfo << '35d7ab5f71aabd7ebb6fcf9d09cede62'
>XSHA256 (FastTree-2.1.8.c) = b172d160f1b12b764d21a6937c3ce01ba42fa8743d95e083e031c6947762f837
>XSIZE (FastTree-2.1.8.c) = 385231
>35d7ab5f71aabd7ebb6fcf9d09cede62
>echo x - fasttree/pkg-descr
>sed 's/^X//' >fasttree/pkg-descr << 'a03db08e11044dac333b037a71731653'
>XFastTree infers approximately-maximum-likelihood phylogenetic trees from
>Xalignments of nucleotide or protein sequences. FastTree can handle alignments
>Xwith up to a million of sequences in a reasonable amount of time and memory.
>X
>XWWW: http://www.microbesonline.org/fasttree/
>a03db08e11044dac333b037a71731653
>exit
>

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