Attachment 167451 Details for Bug 206926 – Shar archive

Shar archive

vcftools-shar.txt (text/plain), 2.20 KB, created by Jason W. Bacon on 2016-02-26 16:54:14 UTC

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Creator: Jason W. Bacon

Created: 2016-02-26 16:54:14 UTC

Size: 2.20 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	vcftools
>#	vcftools/Makefile
>#	vcftools/distinfo
>#	vcftools/pkg-descr
>#	vcftools/pkg-plist
>#
>echo c - vcftools
>mkdir -p vcftools > /dev/null 2>&1
>echo x - vcftools/Makefile
>sed 's/^X//' >vcftools/Makefile << '0940dee1d5c0dd738a62c871f999aaa0'
>X# Created by: Jason Bacon <bacon4000@gmail.com>
>X# $FreeBSD$
>X
>XPORTNAME=	vcftools
>XPORTVERSION=	0.1.14
>XDISTVERSIONPREFIX=	v
>XCATEGORIES=	biology
>XDISTNAME=	${PORTNAME}_${PORTVERSION}
>X
>XMAINTAINER=	bacon4000@gmail.com
>XCOMMENT=	Tools for working with VCF genomics files
>X
>XLICENSE=	LGPL3
>X
>XUSES=		autoreconf gmake perl5 pkgconfig
>X
>XGNU_CONFIGURE=	yes
>X# No zlib.pc on 9.x
>XCONFIGURE_ENV=	ZLIB_CFLAGS=" " ZLIB_LIBS="-lz"
>X
>XUSE_GITHUB=	yes
>X
>X.include <bsd.port.mk>
>0940dee1d5c0dd738a62c871f999aaa0
>echo x - vcftools/distinfo
>sed 's/^X//' >vcftools/distinfo << 'd3a1647ec21cc59444f4291b558c7ac6'
>XSHA256 (vcftools_0.1.14_GH0.tar.gz) = ba440584645e9901c1eeb6b769ccd828591f0575c73349072cde3efa77da6fdf
>XSIZE (vcftools_0.1.14_GH0.tar.gz) = 241228
>d3a1647ec21cc59444f4291b558c7ac6
>echo x - vcftools/pkg-descr
>sed 's/^X//' >vcftools/pkg-descr << '00ce65b5c138e69855fe452f0c9efdcf'
>XA set of tools written in Perl and C++ for working with VCF files, such as
>Xthose generated by the 1000 Genomes Project.
>X
>XWWW: https://github.com/vcftools/vcftools
>00ce65b5c138e69855fe452f0c9efdcf
>echo x - vcftools/pkg-plist
>sed 's/^X//' >vcftools/pkg-plist << 'e22c373c2479f0ff2b8b1206ba2aa33b'
>Xbin/fill-aa
>Xbin/fill-an-ac
>Xbin/fill-fs
>Xbin/fill-ref-md5
>Xbin/vcf-annotate
>Xbin/vcf-compare
>Xbin/vcf-concat
>Xbin/vcf-consensus
>Xbin/vcf-contrast
>Xbin/vcf-convert
>Xbin/vcf-fix-newlines
>Xbin/vcf-fix-ploidy
>Xbin/vcf-indel-stats
>Xbin/vcf-isec
>Xbin/vcf-merge
>Xbin/vcf-phased-join
>Xbin/vcf-query
>Xbin/vcf-shuffle-cols
>Xbin/vcf-sort
>Xbin/vcf-stats
>Xbin/vcf-subset
>Xbin/vcf-to-tab
>Xbin/vcf-tstv
>Xbin/vcf-validator
>Xbin/vcftools
>X%%SITE_PERL%%/FaSlice.pm
>X%%SITE_PERL%%/Vcf.pm
>X%%SITE_PERL%%/VcfStats.pm
>Xman/man1/vcftools.1.gz
>e22c373c2479f0ff2b8b1206ba2aa33b
>exit
>

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