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(-)../../home/pi/myp/biology/pycogent/Makefile (-6 / +3 lines)
Lines 2-13 Link Here
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# $FreeBSD: head/biology/pycogent/Makefile 412344 2016-04-01 13:29:15Z mat $
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# $FreeBSD: head/biology/pycogent/Makefile 412344 2016-04-01 13:29:15Z mat $
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PORTNAME=	pycogent

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PORTNAME=	pycogent

        

          
            

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PORTVERSION=	1.5.3


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PORTVERSION=	1.9

            

            

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PORTREVISION=	3


              
              
            

        

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CATEGORIES=	biology python

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CATEGORIES=	biology python

        

            

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MASTER_SITES=	SF/${PORTNAME}/PyCogent/${PORTVERSION}

              
              
            

            

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DISTNAME=	PyCogent-${PORTVERSION}

            

            

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EXTRACT_SUFX=	.tgz

            

        

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MAINTAINER=	wen@FreeBSD.org

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MAINTAINER=	wen@FreeBSD.org

        

        

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COMMENT=	Toolkit for statistical analysis of biological sequences

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COMMENT=	Toolkit for statistical analysis of biological sequences

        

  

    
      
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BUILD_DEPENDS=	${PYNUMPY} \

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BUILD_DEPENDS=	${PYNUMPY} \

        

        

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		${LOCALBASE}/bin/cython:lang/cython \

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		${LOCALBASE}/bin/cython:lang/cython \

        

        

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		${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \

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		${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \

        

          
            

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		${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:databases/py-sqlalchemy06


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		${PYTHON_PKGNAMEPREFIX}sqlalchemy10>=1.0.13:databases/py-sqlalchemy10

            

        

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RUN_DEPENDS:=	${BUILD_DEPENDS}

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RUN_DEPENDS:=	${BUILD_DEPENDS}

        

        

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USES=		python

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USES=		python

        

            

              
              
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USE_GITHUB=	yes

            

        

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USE_PYTHON=	distutils autoplist

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USE_PYTHON=	distutils autoplist

        

        

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.include <bsd.port.mk>

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.include <bsd.port.mk>

        



(-)../../home/pi/myp/biology/pycogent/distinfo
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SHA256 (PyCogent-1.5.3.tgz) = ad883cf4f8bbedd797b934a6ba75a20df2313736e84bff3d5a0e54ac41ea425c


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TIMESTAMP = 1470477061

            

            

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SIZE (PyCogent-1.5.3.tgz) = 3360039


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SHA256 (pycogent-pycogent-1.9_GH0.tar.gz) = c9f56d21d764aa62e3e8a9df5a300eb7fb59e502572bec41894d21df19aeceb5

            

            

              
              

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SIZE (pycogent-pycogent-1.9_GH0.tar.gz) = 3744597

            



(-)../../home/pi/myp/biology/pycogent/pkg-descr
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PyCogent is a software library for genomic biology. It is a fully integrated


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PyCogent is a software library for genomic biology. It is a fully

            

            

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and thoroughly tested framework for: controlling third-party applications;


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integrated and thoroughly tested framework for: controlling third-party

            

            

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devising workflows; querying databases; conducting novel probabilistic


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applications; devising workflows; querying databases; conducting

            

            

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analyses of biological sequence evolution; and generating publication quality


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novel probabilistic analyses of biological sequence evolution; and

            

            

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graphics. It is distinguished by many unique built-in capabilities (such as


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generating publication quality graphics. It is distinguished by

            

            

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true codon alignment) and the frequent addition of entirely new methods for


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many unique built-in capabilities (such as true codon alignment)

            

            

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the analysis of genomic data.


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and the frequent addition of entirely new methods for the analysis

            

            

              
              

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of genomic data.

            

        

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WWW: http://pycogent.sourceforge.net/


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WWW: http://pycogent.org/

            






  

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