Attachment 173353 Details for Bug 211621 – patch-v2

[patch] patch-v2

cog.diff (text/plain), 2.86 KB, created by Kurt Jaeger on 2016-08-06 09:56:16 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Kurt Jaeger

Created: 2016-08-06 09:56:16 UTC

Size: 2.86 KB

patch

obsolete

>diff -r -u -N biology/pycogent/Makefile ../../home/pi/myp/biology/pycogent/Makefile
>--- biology/pycogent/Makefile	2016-04-01 17:16:02.967698000 +0200
>+++ ../../home/pi/myp/biology/pycogent/Makefile	2016-08-06 11:51:14.093338000 +0200
>@@ -2,12 +2,8 @@
> # $FreeBSD: head/biology/pycogent/Makefile 412344 2016-04-01 13:29:15Z mat $
> 
> PORTNAME=	pycogent
>-PORTVERSION=	1.5.3
>-PORTREVISION=	3
>+PORTVERSION=	1.9
> CATEGORIES=	biology python
>-MASTER_SITES=	SF/${PORTNAME}/PyCogent/${PORTVERSION}
>-DISTNAME=	PyCogent-${PORTVERSION}
>-EXTRACT_SUFX=	.tgz
> 
> MAINTAINER=	wen@FreeBSD.org
> COMMENT=	Toolkit for statistical analysis of biological sequences
>@@ -17,10 +13,11 @@
> BUILD_DEPENDS=	${PYNUMPY} \
> 		${LOCALBASE}/bin/cython:lang/cython \
> 		${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \
>-		${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:databases/py-sqlalchemy06
>+		${PYTHON_PKGNAMEPREFIX}sqlalchemy10>=1.0.13:databases/py-sqlalchemy10
> RUN_DEPENDS:=	${BUILD_DEPENDS}
> 
> USES=		python
>+USE_GITHUB=	yes
> USE_PYTHON=	distutils autoplist
> 
> .include <bsd.port.mk>
>diff -r -u -N biology/pycogent/distinfo ../../home/pi/myp/biology/pycogent/distinfo
>--- biology/pycogent/distinfo	2015-08-01 00:42:08.420043000 +0200
>+++ ../../home/pi/myp/biology/pycogent/distinfo	2016-08-06 11:51:01.973791000 +0200
>@@ -1,2 +1,3 @@
>-SHA256 (PyCogent-1.5.3.tgz) = ad883cf4f8bbedd797b934a6ba75a20df2313736e84bff3d5a0e54ac41ea425c
>-SIZE (PyCogent-1.5.3.tgz) = 3360039
>+TIMESTAMP = 1470477061
>+SHA256 (pycogent-pycogent-1.9_GH0.tar.gz) = c9f56d21d764aa62e3e8a9df5a300eb7fb59e502572bec41894d21df19aeceb5
>+SIZE (pycogent-pycogent-1.9_GH0.tar.gz) = 3744597
>diff -r -u -N biology/pycogent/pkg-descr ../../home/pi/myp/biology/pycogent/pkg-descr
>--- biology/pycogent/pkg-descr	2015-08-01 00:42:08.420693000 +0200
>+++ ../../home/pi/myp/biology/pycogent/pkg-descr	2016-08-06 11:55:36.621857000 +0200
>@@ -1,9 +1,10 @@
>-PyCogent is a software library for genomic biology. It is a fully integrated
>-and thoroughly tested framework for: controlling third-party applications;
>-devising workflows; querying databases; conducting novel probabilistic
>-analyses of biological sequence evolution; and generating publication quality
>-graphics. It is distinguished by many unique built-in capabilities (such as
>-true codon alignment) and the frequent addition of entirely new methods for
>-the analysis of genomic data.
>+PyCogent is a software library for genomic biology. It is a fully
>+integrated and thoroughly tested framework for: controlling third-party
>+applications; devising workflows; querying databases; conducting
>+novel probabilistic analyses of biological sequence evolution; and
>+generating publication quality graphics. It is distinguished by
>+many unique built-in capabilities (such as true codon alignment)
>+and the frequent addition of entirely new methods for the analysis
>+of genomic data.
> 
>-WWW: http://pycogent.sourceforge.net/
>+WWW: http://pycogent.org/

Actions: View | Diff

Attachments on bug 211621: 173352 | 173353