FreeBSD Bugzilla – Attachment 205881 Details for
Bug 239295
science/netcdf Fails to configure
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The build log
netcdf-4.7.0.log (text/plain), 21.26 KB, created by
Leon Dietrich
on 2019-07-19 08:20:39 UTC
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Description:
The build log
Filename:
MIME Type:
Creator:
Leon Dietrich
Created:
2019-07-19 08:20:39 UTC
Size:
21.26 KB
patch
obsolete
>=>> Building science/netcdf >build started at Thu Jul 18 21:25:42 CEST 2019 >port directory: /usr/ports/science/netcdf >package name: netcdf-4.7.0 >building for: FreeBSD buildbot.technikradio.org 12.0-RELEASE-p7 FreeBSD 12.0-RELEASE-p7 amd64 >maintained by: sunpoet@FreeBSD.org >Makefile ident: $FreeBSD: head/science/netcdf/Makefile 500528 2019-04-30 19:07:06Z sunpoet $ >Poudriere version: 3.3.2_1 >Host OSVERSION: 1200086 >Jail OSVERSION: 1200086 >Job Id: 04 > >---Begin Environment--- >SHELL=/bin/csh >OSVERSION=1200086 >UNAME_v=FreeBSD 12.0-RELEASE-p7 >UNAME_r=12.0-RELEASE-p7 >BLOCKSIZE=K >MAIL=/var/mail/root >STATUS=1 >HOME=/root >PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin >LOCALBASE=/usr/local >USER=root >LIBEXECPREFIX=/usr/local/libexec/poudriere >POUDRIERE_VERSION=3.3.2_1 >MASTERMNT=/usr/local/poudriere/data/.m/x230-11_0-default/ref >POUDRIERE_BUILD_TYPE=bulk >PACKAGE_BUILDING=yes >SAVED_TERM=screen >GID=0 >UID=0 >PWD=/usr/local/poudriere/data/.m/x230-11_0-default/ref/.p/pool >P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS >MASTERNAME=x230-11_0-default >SCRIPTPREFIX=/usr/local/share/poudriere >OLDPWD=/usr/local/poudriere/data/.m/x230-11_0-default/ref/.p >SCRIPTPATH=/usr/local/share/poudriere/bulk.sh >POUDRIEREPATH=/usr/local/bin/poudriere >---End Environment--- > >---Begin Poudriere Port Flags/Env--- >PORT_FLAGS= >PKGENV= >FLAVOR= >DEPENDS_ARGS= >MAKE_ARGS= >---End Poudriere Port Flags/Env--- > >---Begin OPTIONS List--- >===> The following configuration options are available for netcdf-4.7.0: > DAP=off: Build DAP client and remote testing > DOCS=on: Build and/or install documentation > DOXYGEN=off: Build documentation with Doxygen > SZIP=on: SZIP support (required if HDF5 was built with SZIP) >===> Use 'make config' to modify these settings >---End OPTIONS List--- > >--MAINTAINER-- >sunpoet@FreeBSD.org >--End MAINTAINER-- > >--CONFIGURE_ARGS-- >--disable-filter-testing --enable-netcdf-4 --disable-dap --disable-doxygen --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} >--End CONFIGURE_ARGS-- > >--CONFIGURE_ENV-- >MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/netcdf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/netcdf/work HOME=/wrkdirs/usr/ports/science/netcdf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/netcdf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 >--End CONFIGURE_ENV-- > >--MAKE_ENV-- >XDG_DATA_HOME=/wrkdirs/usr/ports/science/netcdf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/netcdf/work HOME=/wrkdirs/usr/ports/science/netcdf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/netcdf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-fPIC -DPIC -isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-lsz -L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" >--End MAKE_ENV-- > >--PLIST_SUB-- >PORTDOCS="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/netcdf" EXAMPLESDIR="share/examples/netcdf" DATADIR="share/netcdf" WWWDIR="www/netcdf" ETCDIR="etc/netcdf" >--End PLIST_SUB-- > >--SUB_LIST-- > PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/netcdf DOCSDIR=/usr/local/share/doc/netcdf EXAMPLESDIR=/usr/local/share/examples/netcdf WWWDIR=/usr/local/www/netcdf ETCDIR=/usr/local/etc/netcdf >--End SUB_LIST-- > >---Begin make.conf--- >USE_PACKAGE_DEPENDS=yes >BATCH=yes >WRKDIRPREFIX=/wrkdirs >PORTSDIR=/usr/ports >PACKAGES=/packages >DISTDIR=/distfiles >FORCE_PACKAGE=yes >PACKAGE_BUILDING=yes >PACKAGE_BUILDING_FLAVORS=yes >#### /usr/local/etc/poudriere.d/x230-11_0-make.conf #### >DISABLE_LICENSES=yes >#DEFAULT_VERSIONS+=python=3.6 >WAYLAND=no >MAKE_JOBS_UNSAFE=yes >.if ${.CURDIR:M*graphics/ImageMagick6-nox11*} > CC=gcc8 > CXX=g++8 > CPP=cpp8 > CFLAGS= -O2 -pipe -march=barcelona -mtune=barcelona > COPTFLAGS= -O2 -pipe -march=barcelona -mtune=barcelona >.endif >#### /usr/ports/Mk/Scripts/ports_env.sh #### >_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin >_ALTCCVERSION_921dbbb2=none >_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" >CC_OUTPUT_921dbbb2_58173849=yes >CC_OUTPUT_921dbbb2_9bdba57c=yes >CC_OUTPUT_921dbbb2_6a4fe7f5=yes >CC_OUTPUT_921dbbb2_6bcac02b=yes >CC_OUTPUT_921dbbb2_67d20829=yes >CC_OUTPUT_921dbbb2_bfa62e83=yes >CC_OUTPUT_921dbbb2_f0b4d593=yes >CC_OUTPUT_921dbbb2_308abb44=yes >CC_OUTPUT_921dbbb2_f00456e5=yes >CC_OUTPUT_921dbbb2_65ad290d=yes >CC_OUTPUT_921dbbb2_f2776b26=yes >CC_OUTPUT_921dbbb2_b2657cc3=yes >CC_OUTPUT_921dbbb2_380987f7=yes >CC_OUTPUT_921dbbb2_160933ec=yes >CC_OUTPUT_921dbbb2_fb62803b=yes >_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin >_OBJC_ALTCCVERSION_921dbbb2=none >ARCH=amd64 >OPSYS=FreeBSD >_OSRELEASE=12.0-RELEASE-p7 >OSREL=12.0 >OSVERSION=1200086 >PYTHONBASE=/usr/local >HAVE_COMPAT_IA32_KERN=YES >CONFIGURE_MAX_CMD_LEN=262144 >HAVE_PORTS_ENV=1 >#### Misc Poudriere #### >---End make.conf--- >--Resource limits-- >cpu time (seconds, -t) unlimited >file size (512-blocks, -f) unlimited >data seg size (kbytes, -d) 33554432 >stack size (kbytes, -s) 524288 >core file size (512-blocks, -c) unlimited >max memory size (kbytes, -m) unlimited >locked memory (kbytes, -l) unlimited >max user processes (-u) 89999 >open files (-n) 1024 >virtual mem size (kbytes, -v) unlimited >swap limit (kbytes, -w) unlimited >socket buffer size (bytes, -b) unlimited >pseudo-terminals (-p) unlimited >kqueues (-k) unlimited >umtx shared locks (-o) unlimited >--End resource limits-- >=======================<phase: check-sanity >============================ >=========================================================================== >=======================<phase: pkg-depends >============================ >===> netcdf-4.7.0 depends on file: /usr/local/sbin/pkg - not found >===> Installing existing package /packages/All/pkg-1.11.1.txz >[buildbot.technikradio.org] Installing pkg-1.11.1... >[buildbot.technikradio.org] Extracting pkg-1.11.1: .......... done >===> netcdf-4.7.0 depends on file: /usr/local/sbin/pkg - found >===> Returning to build of netcdf-4.7.0 >=========================================================================== >=======================<phase: fetch-depends >============================ >=========================================================================== >=======================<phase: fetch >============================ >===> Fetching all distfiles required by netcdf-4.7.0 for building >=========================================================================== >=======================<phase: checksum >============================ >===> Fetching all distfiles required by netcdf-4.7.0 for building >=> SHA256 Checksum OK for netcdf-c-4.7.0.tar.gz. >=========================================================================== >=======================<phase: extract-depends>============================ >=========================================================================== >=======================<phase: extract >============================ >===> Fetching all distfiles required by netcdf-4.7.0 for building >===> Extracting for netcdf-4.7.0 >=> SHA256 Checksum OK for netcdf-c-4.7.0.tar.gz. >=========================================================================== >=======================<phase: patch-depends >============================ >=========================================================================== >=======================<phase: patch >============================ >===> Patching for netcdf-4.7.0 >=========================================================================== >=======================<phase: build-depends >============================ >===> netcdf-4.7.0 depends on executable: gmake - not found >===> Installing existing package /packages/All/gmake-4.2.1_3.txz >[buildbot.technikradio.org] Installing gmake-4.2.1_3... >[buildbot.technikradio.org] `-- Installing gettext-runtime-0.20.1... >[buildbot.technikradio.org] | `-- Installing indexinfo-0.3.1... >[buildbot.technikradio.org] | `-- Extracting indexinfo-0.3.1: . done >[buildbot.technikradio.org] `-- Extracting gettext-runtime-0.20.1: .......... done >[buildbot.technikradio.org] Extracting gmake-4.2.1_3: .......... done >===> netcdf-4.7.0 depends on executable: gmake - found >===> Returning to build of netcdf-4.7.0 >=========================================================================== >=======================<phase: lib-depends >============================ >===> netcdf-4.7.0 depends on shared library: libhdf5.so - not found >===> Installing existing package /packages/All/hdf5-1.10.5_1.txz >[buildbot.technikradio.org] Installing hdf5-1.10.5_1... >[buildbot.technikradio.org] `-- Installing hdf-szip-2.1.1... >[buildbot.technikradio.org] `-- Extracting hdf-szip-2.1.1: ....... done >[buildbot.technikradio.org] Extracting hdf5-1.10.5_1: .......... done >===> netcdf-4.7.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) >===> Returning to build of netcdf-4.7.0 >===> netcdf-4.7.0 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) >=========================================================================== >=======================<phase: configure >============================ >===> Configuring for netcdf-4.7.0 >configure: loading site script /usr/ports/Templates/config.site >configure: netCDF 4.7.0 >checking build system type... amd64-portbld-freebsd12.0 >checking host system type... amd64-portbld-freebsd12.0 >checking target system type... amd64-portbld-freebsd12.0 >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p >checking for gawk... (cached) /usr/bin/awk >checking whether gmake sets $(MAKE)... yes >checking whether gmake supports nested variables... yes >checking whether to enable maintainer-specific portions of Makefiles... no >configure: checking user options >checking whether a NCIO_MINBLOCKSIZE was specified... 256 >checking for valgrind... no >checking if fsync support is enabled... no >checking if jna bug workaround is enabled... no >checking whether we should build netCDF-4... yes >checking whether we should build with HDF5... yes >checking do we require hdf5 dynamic-loading support... yes >checking whether reading of HDF4 SD files is to be enabled... no >checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no >checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no >checking whether parallel IO tests should be run... no >checking whether a user specified program to run mpi programs... mpiexec >checking whether a default chunk size in bytes was specified... 4194304 >checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 >checking whether a number of chunks for the default per-variable cache was specified... 10 >checking whether a default file cache size for HDF5 was specified... 4194304 >checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 >checking whether a default cache preemption for HDF5 was specified... 0.75 >checking whether netCDF-4 logging is enabled... no >checking whether nc_set_log_level() function is included (will do nothing unless enable-logging is also used)... yes >checking whether DAP client(s) are to be built... no >checking whether gmake supports the include directive... yes (GNU style) >checking for gcc... cc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether cc accepts -g... yes >checking for cc option to accept ISO C89... none needed >checking whether cc understands -c and -o together... yes >checking dependency style of cc... gcc3 >checking for curl_easy_setopt in -lcurl... no >checking whether dap remote testing should be enabled (default on)... no >checking whether dap remote authorization testing should be enabled (default off)... no >checking which remote test server(s) to use... 149.165.169.123:8080,remotetest.unidata.ucar.edu >checking whether the time-consuming dap tests should be enabled (default off)... no >checking whether to enable strict null-byte header padding when reading (default off)... no >checking whether FFIO will be used... no >checking whether STDIO will be used... no >checking whether examples should be built... yes >checking whether v2 netCDF API should be built... yes >checking whether the ncgen/ncdump/nccopy should be built... yes >checking whether test should be built and run... yes >checking whether large file (> 2GB) tests should be run... no >checking whether benchmarks should be run... no >checking whether extreme numbers should be used in tests... yes >checking where to put large temp files if large file tests are run... . >checking Extra values for _NCProperties... >checking whether user-defined format 0 was specified... >checking whether a magic number for user-defined format 0 was specified... >checking whether user-defined format 1 was specified... >checking whether a magic number for user-defined format 1 was specified... >configure: finding C compiler >checking for gcc... (cached) cc >checking whether we are using the GNU C compiler... (cached) yes >checking whether cc accepts -g... (cached) yes >checking for cc option to accept ISO C89... (cached) none needed >checking whether cc understands -c and -o together... (cached) yes >checking dependency style of cc... (cached) gcc3 >checking for an ANSI C-conforming const... yes >checking whether CURLOPT_USERNAME is defined... no >checking whether CURLOPT_PASSWORD is defined... no >checking whether CURLOPT_KEYPASSWD is defined... no >checking whether CURLINFO_RESPONSE_CODE is defined... no >checking whether CURLOPT_BUFFERSIZE is defined... no >checking whether CURLOPT_TCP_KEEPALIVE is defined... no >configure: setting up libtool >checking how to print strings... printf >checking for a sed that does not truncate output... (cached) /usr/bin/sed >checking for grep that handles long lines and -e... (cached) /usr/bin/grep >checking for egrep... (cached) /usr/bin/egrep >checking for fgrep... (cached) /usr/bin/fgrep >checking for ld used by cc... /usr/bin/ld >checking if the linker (/usr/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm >checking the name lister (/usr/bin/nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... (cached) 262144 >checking how to convert amd64-portbld-freebsd12.0 file names to amd64-portbld-freebsd12.0 format... func_convert_file_noop >checking how to convert amd64-portbld-freebsd12.0 file names to toolchain format... func_convert_file_noop >checking for /usr/bin/ld option to reload object files... -r >checking for objdump... objdump >checking how to recognize dependent libraries... pass_all >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for ar... ar >checking for archiver @FILE support... no >checking for strip... strip >checking for ranlib... ranlib >checking command to parse /usr/bin/nm output from cc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for mt... mt >checking if mt is a manifest tool... no >checking how to run the C preprocessor... cpp >checking for ANSI C header files... (cached) yes >checking for sys/types.h... (cached) yes >checking for sys/stat.h... (cached) yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for memory.h... (cached) yes >checking for strings.h... (cached) yes >checking for inttypes.h... (cached) yes >checking for stdint.h... (cached) yes >checking for unistd.h... (cached) yes >checking for dlfcn.h... (cached) yes >checking for objdir... .libs >checking if cc supports -fno-rtti -fno-exceptions... yes >checking for cc option to produce PIC... -fPIC -DPIC >checking if cc PIC flag -fPIC -DPIC works... yes >checking if cc static flag -static works... yes >checking if cc supports -c -o file.o... yes >checking if cc supports -c -o file.o... (cached) yes >checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... freebsd12.0 ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >configure: finding other utilities >checking for m4... m4 >checking for doxygen... no >configure: WARNING: Doxygen not found - documentation will not be built >checking for dot... no >configure: WARNING: dot not found - will use simple charts in documentation >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >configure: displaying some results >checking CPPFLAGS... -fPIC -DPIC -isystem /usr/local/include >checking CC CFLAGS... cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing >checking type cc... cc is a tracked alias for /usr/bin/cc >checking CXX... c++ >checking CXXFLAGS... -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include >checking type c++... c++ is /usr/bin/c++ >checking FC... unset >checking F90... unset >checking AR... ar >checking AR_FLAGS... cru >checking type ar... ar is /usr/bin/ar >checking NM... /usr/bin/nm >checking NMFLAGS... >configure: checking types, headers, and functions >checking for sys/param.h... (cached) yes >checking for libgen.h... (cached) yes >checking for ANSI C header files... (cached) yes >checking for locale.h... (cached) yes >checking for stdio.h... (cached) yes >checking for stdarg.h... (cached) yes >checking for fcntl.h... (cached) yes >checking for malloc.h... (cached) no >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/stat.h... (cached) yes >checking for getopt.h... (cached) yes >checking for sys/time.h... (cached) yes >checking for sys/types.h... (cached) yes >checking for sys/resource.h... (cached) yes >checking ftw.h usability... yes >checking ftw.h presence... yes >checking for ftw.h... yes >checking for strlcat... (cached) yes >checking for snprintf... (cached) yes >checking for strdup... (cached) yes >checking for strtoll... (cached) yes >checking for strtoull... (cached) yes >checking for mkstemp... (cached) yes >checking for mktemp... (cached) yes >checking for random... (cached) yes >checking for getrlimit... (cached) yes >checking for gettimeofday... (cached) yes >checking for fsync... (cached) yes >checking for MPI_Comm_f2c... no >checking for MPI_Info_f2c... no >checking for memmove... (cached) yes >checking for getpagesize... (cached) yes >checking for sysconf... (cached) yes >checking whether mmap is enabled for in-memory files... no >checking for mmap... (cached) yes >checking for mremap... no >checking whether MAP_ANONYMOUS is defined... yes >mmap functionality is not available: disabling mmap >checking whether byte range support is enabled... no >configure: error: curl required for byte range support. Install curl or build without --enable-byterange. >===> Script "configure" failed unexpectedly. >Please report the problem to sunpoet@FreeBSD.org [maintainer] and attach the >"/wrkdirs/usr/ports/science/netcdf/work/netcdf-c-4.7.0/config.log" including >the output of the failure of your make command. Also, it might be a good idea >to provide an overview of all packages installed on your system (e.g. a >/usr/local/sbin/pkg-static info -g -Ea). >*** Error code 1 > >Stop. >make: stopped in /usr/ports/science/netcdf >=>> Cleaning up wrkdir >===> Cleaning for netcdf-4.7.0 >build of science/netcdf | netcdf-4.7.0 ended at Thu Jul 18 21:25:48 CEST 2019 >build time: 00:00:06 >!!! build failure encountered !!!
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bug 239295
: 205881