Bug 175601 - [update]: science/massxpert up to latest version
Summary: [update]: science/massxpert up to latest version
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: freebsd-ports-bugs (Nobody)
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-01-26 07:50 UTC by Veniamin
Modified: 2013-02-09 14:10 UTC (History)
0 users

See Also:


Attachments
file.diff (1007 bytes, patch)
2013-01-26 07:50 UTC, Veniamin
no flags Details | Diff

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Description Veniamin 2013-01-26 07:50:00 UTC
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
Comment 1 Martin Wilke freebsd_committer 2013-02-09 14:02:05 UTC
State Changed
From-To: open->closed

Committed. Thanks!
Comment 2 dfilter service freebsd_committer 2013-02-09 14:02:10 UTC
Author: miwi
Date: Sat Feb  9 14:02:02 2013
New Revision: 311977
URL: http://svnweb.freebsd.org/changeset/ports/311977

Log:
  - Update to 3.4.0
  
  PR:		175601
  Submitted by:	maintainer

Modified:
  head/science/massxpert/Makefile   (contents, props changed)
  head/science/massxpert/distinfo   (contents, props changed)

Modified: head/science/massxpert/Makefile
==============================================================================
--- head/science/massxpert/Makefile	Sat Feb  9 14:00:30 2013	(r311976)
+++ head/science/massxpert/Makefile	Sat Feb  9 14:02:02 2013	(r311977)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	massxpert
-PORTVERSION=	3.3.0
+PORTVERSION=	3.4.0
 CATEGORIES=	science
 MASTER_SITES=	http://download.tuxfamily.org/massxpert/source/
 
@@ -19,6 +19,8 @@ LIB_DEPENDS=	pthread-stubs:${PORTSDIR}/d
 
 LICENSE=	GPLv3
 
+USE_GCC=	any
+USE_BZIP2=	yes
 USE_CMAKE=	yes
 USE_GETTEXT=	yes
 USE_ICONV=	yes

Modified: head/science/massxpert/distinfo
==============================================================================
--- head/science/massxpert/distinfo	Sat Feb  9 14:00:30 2013	(r311976)
+++ head/science/massxpert/distinfo	Sat Feb  9 14:02:02 2013	(r311977)
@@ -1,2 +1,2 @@
-SHA256 (massxpert-3.3.0.tar.gz) = eed640a43825ab58dc47cad93831a767c574c93f9ee3aa37e621beb2a999177f
-SIZE (massxpert-3.3.0.tar.gz) = 16853069
+SHA256 (massxpert-3.4.0.tar.bz2) = b06314722b4cbdf68dc76e55933a79487848c655fc65341a8dbc707ed89cc9e8
+SIZE (massxpert-3.4.0.tar.bz2) = 16544044
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