Bug 181873 - math/jags: classic-bugs.tar.gz: size mismatch
Summary: math/jags: classic-bugs.tar.gz: size mismatch
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: Normal Affects Only Me
Assignee: Brendan Fabeny
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-09-06 17:20 UTC by jszhao
Modified: 2013-09-29 10:00 UTC (History)
0 users

See Also:


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Description jszhao 2013-09-06 17:20:00 UTC
when install ports math/jags, the size of the file classic-bugs.tar.gz downloaded from sourceforge.net is mismatch with the one in math/jags/distinfo, with many message similar with the following:

fetch: http://netcologne.dl.sourceforge.net/project/mcmc-jags/Examples/3.x/classic-bugs.tar.gz: size mismatch: expected 81419, actual 83112

How-To-Repeat: cd /usr/ports/math/jags
make install clean
Comment 1 Edwin Groothuis freebsd_committer 2013-09-06 21:12:04 UTC
Responsible Changed
From-To: freebsd-ports-bugs->bf

Over to maintainer (via the GNATS Auto Assign Tool)
Comment 2 dfilter service freebsd_committer 2013-09-29 09:54:46 UTC
Author: bf
Date: Sun Sep 29 08:54:39 2013
New Revision: 328652
URL: http://svnweb.freebsd.org/changeset/ports/328652

Log:
  Update to 3.4.0
  
  PR:		181873

Modified:
  head/math/jags/Makefile
  head/math/jags/distinfo

Modified: head/math/jags/Makefile
==============================================================================
--- head/math/jags/Makefile	Sun Sep 29 08:38:19 2013	(r328651)
+++ head/math/jags/Makefile	Sun Sep 29 08:54:39 2013	(r328652)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	mcmc-jags
-PORTVERSION=	3.3.0
+PORTVERSION=	3.4.0
 CATEGORIES=	math
 MASTER_SITES=	SF:1,2,3,4
 MASTER_SITE_SUBDIR=	mcmc-jags/JAGS/${S}.x/Source/:1 \
@@ -18,7 +18,7 @@ COMMENT=	Just Another Gibbs Sampler
 LICENSE=	GPLv2
 
 GNU_CONFIGURE=	yes
-USES=		bison
+USES=		bison gmake
 USE_FORTRAN=	yes
 USE_LDCONFIG=	yes
 
@@ -51,11 +51,11 @@ WITH_BLAS?=	reference
 .endif
 
 .if ${WITH_BLAS} == "atlas"
-LIB_DEPENDS+=	atlas:${PORTSDIR}/math/atlas
+LIB_DEPENDS+=	libatlas.so:${PORTSDIR}/math/atlas
 CONFIGURE_ARGS=	--with-lapack="-lalapack -lptcblas" --with-blas="-lptf77blas"
 .elif ${WITH_BLAS} == "reference"
-LIB_DEPENDS+=	blas:${PORTSDIR}/math/blas
-LIB_DEPENDS+=	lapack:${PORTSDIR}/math/lapack
+LIB_DEPENDS+=	libblas.so:${PORTSDIR}/math/blas
+LIB_DEPENDS+=	liblapack.so:${PORTSDIR}/math/lapack
 CONFIGURE_ARGS=	--with-lapack="-llapack" --with-blas="-lblas"
 .else
 IGNORE =	: invalid value for WITH_BLAS: ${WITH_BLAS}
@@ -94,9 +94,11 @@ BUILD_DEPENDS+=	${LOCALBASE}/lib/R/libra
 
 check test: install
 .for i in 1 2
-	cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \
-	${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} check
+	@cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \
+	${MAKE_CMD} ${MAKE_ARGS} check
 .endfor
+	@${FIND} ${WRKDIR}/classic-bugs -type f -name check.log | ${SORT} | \
+	${XARGS} -tI @  ${CAT} @
 
 .endif
 .include <bsd.port.mk>

Modified: head/math/jags/distinfo
==============================================================================
--- head/math/jags/distinfo	Sun Sep 29 08:38:19 2013	(r328651)
+++ head/math/jags/distinfo	Sun Sep 29 08:54:39 2013	(r328652)
@@ -1,10 +1,10 @@
-SHA256 (mcmc-jags/JAGS-3.3.0.tar.gz) = 8a3755c8e8cd5a2d68a465d56f054f1380fa7e2b602bfe65d360eb23e5b6101a
-SIZE (mcmc-jags/JAGS-3.3.0.tar.gz) = 1672361
+SHA256 (mcmc-jags/JAGS-3.4.0.tar.gz) = 2beaa9a2672c2c95efc55ffa4c8b597a872f20232373daebd17ad539d3d7d82b
+SIZE (mcmc-jags/JAGS-3.4.0.tar.gz) = 1677450
 SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b
 SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319
 SHA256 (mcmc-jags/jags_installation_manual.pdf) = 4b339af679186783f1bcfc1c31483238cbd46eb9f1f31eb853da51dae61cb3e5
 SIZE (mcmc-jags/jags_installation_manual.pdf) = 167002
 SHA256 (mcmc-jags/jags_user_manual.pdf) = febaf9b22cee57c2fc688a16969d3ddeaa83c1dee7915b872a6cf6772b1f9958
 SIZE (mcmc-jags/jags_user_manual.pdf) = 325886
-SHA256 (mcmc-jags/classic-bugs.tar.gz) = ae6f9e25f00a3c2bf2d67c8b3fe040f937551ef75407ae0bd8cad5cbc3a8f768
-SIZE (mcmc-jags/classic-bugs.tar.gz) = 81419
+SHA256 (mcmc-jags/classic-bugs.tar.gz) = eee97e64f06189a13f6fdee738ea65db088eafa63a5eddedeef66c685f920bae
+SIZE (mcmc-jags/classic-bugs.tar.gz) = 83112
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Comment 3 Brendan Fabeny freebsd_committer 2013-09-29 09:57:51 UTC
State Changed
From-To: open->closed

distinfo updated in r328652. Thanks!