Bug 257344 - math/adol-c even with python 3.7+ forced the stage phase still fails, but now with missing functions
Summary: math/adol-c even with python 3.7+ forced the stage phase still fails, but now...
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Yuri Victorovich
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-07-22 23:26 UTC by alt2600
Modified: 2021-07-23 05:26 UTC (History)
0 users

See Also:
bugzilla: maintainer-feedback? (yuri)


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Description alt2600 2021-07-22 23:26:45 UTC
Now it seems to fine swig ok, but the staging fails with some crazy error. It looks like its trying to bring in numpy now with python enabled. I have nympy built with atlas, not sure if this is the cause or not. Not sure if its better to just patch python out of this. One really crazy error is speaking about not being able to find compiler options in the registry like it things its running on windows, about 12-15 lines from the top of below. But the main errors speak to missing functions.

Making install in swig
gmake[5]: Entering directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2/ADOL-C/swig'
CXX=c++ /usr/local/bin/python3.8 setup.py install --prefix=/usr/local --only-swig
running install
running build
running build_lib
skipping build of ADOL-C
running build_ext
prefix =  /usr/ports/math/adol-c/work/adolc_base
invoking: c++ -std=c++11 -E -C -P -o adolc_all_pre.hpp -Iinclude -nostdinc -DSWIGPRE adolc_all_in.hpp
building '_adolc' extension
swigging adolc-python.i to adolc-python_wrap.cpp
swig -python -c++ -dirvtable -o adolc-python_wrap.cpp adolc-python.i
../include/adolc/adolc_fatalerror.h:25: Warning 401: Nothing known about base class 'std::exception'. Ignored.
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=westmere -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -march=westmere -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include -fPIC

creating build
creating build/temp.freebsd-12.2-RELEASE-p6-amd64-3.8
compile options: '-I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -I/usr/ports/math/adol-c/work/adolc_base/include -c'
extra options: '-std=c++11 -fPIC -w'
cc: adolc-python_wrap.cpp
adolc-python_wrap.cpp:27591:21: error: use of undeclared identifier 'jac_pat'
      result = (int)jac_pat(arg1,arg2,arg3,(double const *)arg4,arg5,arg6);
                    ^
adolc-python_wrap.cpp:27663:21: error: use of undeclared identifier 'absnormal_jac_pat'
      result = (int)absnormal_jac_pat(arg1,arg2,arg3,arg4,(double const *)arg5,arg6);
                    ^
adolc-python_wrap.cpp:27734:7: error: use of undeclared identifier 'generate_seed_jac'
      generate_seed_jac(arg1,arg2,arg3,arg4,arg5,arg6);
      ^
adolc-python_wrap.cpp:27798:21: error: use of undeclared identifier 'hess_pat'
      result = (int)hess_pat(arg1,arg2,(double const *)arg3,arg4,arg5);
                    ^
adolc-python_wrap.cpp:27861:7: error: use of undeclared identifier 'generate_seed_hess'
      generate_seed_hess(arg1,arg2,arg3,arg4,arg5);
      ^
adolc-python_wrap.cpp:27908:7: error: use of undeclared identifier 'set_HP'
      set_HP(arg1,arg2,arg3);
      ^
adolc-python_wrap.cpp:27955:7: error: use of undeclared identifier 'get_HP'
      get_HP(arg1,arg2,arg3);
      ^
adolc-python_wrap.cpp:28027:21: error: use of undeclared identifier 'bit_vector_propagation'
      result = (int)bit_vector_propagation(arg1,arg2,arg3,(double const *)arg4,arg5,arg6);
                    ^
8 errors generated.
error: Command "cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=westmere -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -march=westmere -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include -fPIC -I/usr/local/lib/python3.8/site-packages/numpy/core/include -I/usr/local/include/python3.8 -I/usr/ports/math/adol-c/work/adolc_base/include -c adolc-python_wrap.cpp -o build/temp.freebsd-12.2-RELEASE-p6-amd64-3.8/adolc-python_wrap.o -std=c++11 -fPIC -w" failed with exit status 1
gmake[5]: *** [Makefile:490: install] Error 1
gmake[5]: Leaving directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2/ADOL-C/swig'
gmake[4]: *** [Makefile:554: install-recursive] Error 1
gmake[4]: Leaving directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2/ADOL-C'
gmake[3]: *** [Makefile:711: install] Error 2
gmake[3]: Leaving directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2/ADOL-C'
gmake[2]: *** [Makefile:537: install-recursive] Error 1
gmake[2]: Leaving directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2'
gmake[1]: *** [Makefile:841: install-strip] Error 2
gmake[1]: Leaving directory '/usr/ports/math/adol-c/work/ADOL-C-2.7.2'
*** Error code 2
Comment 1 Yuri Victorovich freebsd_committer 2021-07-23 05:25:09 UTC
Fix committed.
Comment 2 commit-hook freebsd_committer 2021-07-23 05:26:11 UTC
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=4f49abdc507b2ff8ca579914261f53b828f4f6a4

commit 4f49abdc507b2ff8ca579914261f53b828f4f6a4
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2021-07-23 05:23:08 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2021-07-23 05:23:08 +0000

    math/adol-c: Add PYTHON option that enables puthon binding.

    It properly disables python when off, fixing issues with python
    detection.

    PR:             257344
    Reported by:    alt2600@icloud.com

 math/adol-c/Makefile  | 17 ++++++++++++-----
 math/adol-c/pkg-descr |  2 +-
 2 files changed, 13 insertions(+), 6 deletions(-)