Bug 276814 - biology/py-dnaio: Update to 1.2.0 and fix build with python-3.11
Summary: biology/py-dnaio: Update to 1.2.0 and fix build with python-3.11
Status: Closed FIXED
Alias: None
Product: Ports & Packages
Classification: Unclassified
Component: Individual Port(s) (show other bugs)
Version: Latest
Hardware: Any Any
: --- Affects Only Me
Assignee: Jason W. Bacon
URL:
Keywords:
Depends on:
Blocks: 275494
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Reported: 2024-02-03 23:49 UTC by Wen Heping
Modified: 2024-02-06 13:00 UTC (History)
1 user (show)

See Also:
bugzilla: maintainer-feedback? (jwb)

Attachments
Fix build with python-3.11 (4.33 KB, text/plain)
2024-02-03 23:49 UTC, Wen Heping 		no flags Details
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Description Wen Heping freebsd_committer freebsd_triage 2024-02-03 23:49:43 UTC 
Created attachment 248167 [details]
Fix build with python-3.11

Update to 1.2.0 and fix build with python-3.11
Comment 1 Jason W. Bacon freebsd_committer freebsd_triage 2024-02-04 15:17:57 UTC 
Thanks for the patch.  I'll just make sure this doesn't break py-cutadapt.  Shouldn't take long.
Comment 2 Jason W. Bacon freebsd_committer freebsd_triage 2024-02-04 15:20:28 UTC 
I see that a cutadapt is also included in your patch.  Now I'm wondering why I'm not getting portscout notifications...
Comment 3 commit-hook freebsd_committer freebsd_triage 2024-02-06 12:51:28 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=4da9d2944b81f1470dbe4f9c2ecfbae6fdaf9dc8

commit 4da9d2944b81f1470dbe4f9c2ecfbae6fdaf9dc8
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-02-06 12:46:32 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-02-06 12:46:32 +0000

    archivers/py-xopen: Update to 1.9.0

    Numerous bug fixes and enhancements since 1.1.0
    Changes: https://github.com/pycompression/xopen/tags

    Also added zstandard support via architers/py-zstandard

    PR:             276814
    Reported by:    wen

 archivers/py-xopen/Makefile | 8 +++++---
 archivers/py-xopen/distinfo | 6 +++---
 2 files changed, 8 insertions(+), 6 deletions(-)
Comment 4 commit-hook freebsd_committer freebsd_triage 2024-02-06 12:54:29 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=e35d3c95a0bd6598af9ef66bf7f91cc6e933dd87

commit e35d3c95a0bd6598af9ef66bf7f91cc6e933dd87
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-02-06 12:51:39 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-02-06 12:51:39 +0000

    biology/py-dnaio: Update to 1.2.0

    Numerous bug fixes and enhancements since 0.5.1
    Changes: https://github.com/marcelm/dnaio/tags

    PR:             276814
    Reported by:    wen

 biology/py-dnaio/Makefile | 7 ++++---
 biology/py-dnaio/distinfo | 6 +++---
 2 files changed, 7 insertions(+), 6 deletions(-)
Comment 5 commit-hook freebsd_committer freebsd_triage 2024-02-06 12:58:31 UTC 
A commit in branch main references this bug:

URL: https://cgit.FreeBSD.org/ports/commit/?id=7c280eb4247df10ec0bebfbe6ffd6d42f36142fb

commit 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-02-06 12:55:32 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-02-06 12:55:32 +0000

    biology/py-cutadapt: Update to 4.6

    Numerous bug fixes and enhancements since 3.3
    Changes: https://github.com/marcelm/cutadapt/tags

    PR:             276814
    Reported by:    wen

 biology/py-cutadapt/Makefile | 7 +++----
 biology/py-cutadapt/distinfo | 6 +++---
 2 files changed, 6 insertions(+), 7 deletions(-)
Comment 6 Jason W. Bacon freebsd_committer freebsd_triage 2024-02-06 13:00:31 UTC 
In addition to patches provided:

Added missing cython dependency to py-dnaio
Add optional py-zstandard dependency to py-xopen

Thanks!